| Enrichr: a comprehensive gene set enrichment analysis web server 2016 update MV Kuleshov, MR Jones, AD Rouillard, NF Fernandez, Q Duan, Z Wang, ... Nucleic acids research 44 (W1), W90-W97, 2016 | 9189 | 2016 |
| Immunology of COVID-19: current state of the science N Vabret, GJ Britton, C Gruber, S Hegde, J Kim, M Kuksin, R Levantovsky, ... Immunity 52 (6), 910-941, 2020 | 1947 | 2020 |
| The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins AD Rouillard, GW Gundersen, NF Fernandez, Z Wang, CD Monteiro, ... Database 2016, baw100, 2016 | 1527 | 2016 |
| Single-cell immune landscape of human atherosclerotic plaques DM Fernandez, AH Rahman, NF Fernandez, A Chudnovskiy, ED Amir, ... Nature medicine 25 (10), 1576-1588, 2019 | 769 | 2019 |
| Differential cytokine contributions of perivascular haematopoietic stem cell niches N Asada, Y Kunisaki, H Pierce, Z Wang, NF Fernandez, A Birbrair, ... Nature cell biology 19 (3), 214-223, 2017 | 432 | 2017 |
| LINCS Canvas Browser: interactive web app to query, browse and interrogate LINCS L1000 gene expression signatures Q Duan, C Flynn, M Niepel, M Hafner, JL Muhlich, NF Fernandez, ... Nucleic acids research 42 (W1), W449-W460, 2014 | 344 | 2014 |
| L1000CDS2: LINCS L1000 characteristic direction signatures search engine Q Duan, SP Reid, NR Clark, Z Wang, NF Fernandez, AD Rouillard, ... NPJ systems biology and applications 2 (1), 1-12, 2016 | 308 | 2016 |
| Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd Z Wang, CD Monteiro, KM Jagodnik, NF Fernandez, GW Gundersen, ... Nature communications 7 (1), 12846, 2016 | 298 | 2016 |
| Pharos: collating protein information to shed light on the druggable genome DT Nguyen, S Mathias, C Bologa, S Brunak, N Fernandez, A Gaulton, ... Nucleic acids research 45 (D1), D995-D1002, 2017 | 279 | 2017 |
| Clustergrammer, a web-based heatmap visualization and analysis tool for high-dimensional biological data NF Fernandez, GW Gundersen, A Rahman, ML Grimes, K Rikova, ... Scientific data 4 (1), 1-12, 2017 | 229 | 2017 |
| Intratumoral dendritic cell–CD4+ T helper cell niches enable CD8+ T cell differentiation following PD-1 blockade in hepatocellular carcinoma A Magen, P Hamon, N Fiaschi, BY Soong, MD Park, R Mattiuz, E Humblin, ... Nature medicine 29 (6), 1389-1399, 2023 | 170 | 2023 |
| Photoinduced unfolding of β-lactoglobulin mediated by a water-soluble porphyrin J Belcher, S Sansone, NF Fernandez, WE Haskins, L Brancaleon The Journal of Physical Chemistry B 113 (17), 6020-6030, 2009 | 36 | 2009 |
| Irradiation of the porphyrin causes unfolding of the protein in the protoporphyrin ix/β-lactoglobulin noncovalent complex NF Fernandez, S Sansone, A Mazzini, L Brancaleon The Journal of Physical Chemistry B 112 (25), 7592-7600, 2008 | 33 | 2008 |
| The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins. Database AD Rouillard, GW Gundersen, NF Fernandez, Z Wang, CD Monteiro, ... Oxford), 2016 | 32 | 2016 |
| Systems analysis implicates WAVE2 complex in the pathogenesis of developmental left-sided obstructive heart defects JJ Edwards, AD Rouillard, NF Fernandez, Z Wang, A Lachmann, ... Basic to Translational Science 5 (4), 376-386, 2020 | 20 | 2020 |
| GEN3VA: aggregation and analysis of gene expression signatures from related studies GW Gundersen, KM Jagodnik, H Woodland, NF Fernandez, K Sani, ... BMC bioinformatics 17, 1-12, 2016 | 19 | 2016 |
| A model for the regulatory network controlling the dynamics of kinetochore microtubule plus-ends and poleward flux in metaphase N Fernandez, Q Chang, DW Buster, DJ Sharp, A Ma Proceedings of the National Academy of Sciences 106 (19), 7846-7851, 2009 | 13 | 2009 |
| Intratumoral mregDC and CXCL13 T helper niches enable local differentiation of CD8 T cells following PD-1 blockade A Magen, P Hamon, N Fiaschi, L Troncoso, E Humblin, D D’souza, ... BioRxiv, 2022.06. 22.497216, 2022 | 12 | 2022 |
| Drug/Cell-line Browser: interactive canvas visualization of cancer drug/cell-line viability assay datasets Q Duan, Z Wang, NF Fernandez, AD Rouillard, CM Tan, CH Benes, ... Bioinformatics 30 (22), 3289-3290, 2014 | 11 | 2014 |
| Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd. Nat Commun 7: 12846 Z Wang, CD Monteiro, KM Jagodnik, NF Fernandez, GW Gundersen, ... Supplementary Materials, 2016 | 7 | 2016 |