| GGPONC 2.0—The German Clinical Guideline Corpus for Oncology: Curation Workflow, Annotation Policy, Baseline NER Taggers F Borchert, C Lohr, L Modersohn, J Witt, T Langer, M Follmann, M Gietzelt, ... Proceedings of the Language Resources and Evaluation Conference, 3650-3660, 2022 | 35 | 2022 |
| medBERT.de: A comprehensive German BERT model for the medical domain KK Bressem, JM Papaioannou, P Grundmann, F Borchert, LC Adams, ... Expert Systems with Applications 237, 121598, 2024 | 31 | 2024 |
| BPI Challenge 2018 B van Dongen, F Borchert 4TU.ResearchData, 2018 | 30* | 2018 |
| GGPONC: A Corpus of German Medical Text with Rich Metadata Based on Clinical Practice Guidelines F Borchert †, C Lohr †, L Modersohn †, T Langer, M Follmann, JP Sachs, ... Proceedings of the 11th International Workshop on Health Text Mining and …, 2020 | 26 | 2020 |
| Knowledge bases and software support for variant interpretation in precision oncology F Borchert †, A Mock †, A Tomczak †, J Hügel, S Alkarkoukly, A Knurr, ... Briefings in bioinformatics 22 (6), bbab134, 2021 | 22 | 2021 |
| A distributable German clinical corpus containing cardiovascular clinical routine doctor’s letters P Richter-Pechanski, P Wiesenbach, DM Schwab, C Kiriakou, M He, ... Scientific Data 10 (1), 207, 2023 | 12 | 2023 |
| HPI-DHC@ BioASQ DisTEMIST: Spanish Biomedical Entity Linking with Pre-trained Transformers and Cross-lingual Candidate Retrieval F Borchert, MP Schapranow Proceedings of the Working Notes of CLEF 2022 - Conference and Labs of the …, 2022 | 9 | 2022 |
| Software-Tool Support for Collaborative, Virtual, Multi-Site Molecular Tumor Boards MP Schapranow, F Borchert, N Bougatf, H Hund, R Eils SN Computer Science 4 (4), 358, 2023 | 7 | 2023 |
| xMEN: a modular toolkit for cross-lingual medical entity normalization F Borchert, I Llorca, R Roller, B Arnrich, MP Schapranow JAMIA Open 8 (1), ooae147, 2025 | 6 | 2025 |
| HPI-DHC@ BC8 SympTEMIST Track: Detection and Normalization of Symptom Mentions with SpanMarker and xMEN F Borchert, I Llorca, MP Schapranow Proceedings of the BioCreative VIII Challenge and Workshop: Curation and …, 2023 | 6 | 2023 |
| Programming techniques for improving rule readability for rule-based information extraction natural language processing pipelines of unstructured and semi-structured medical texts N Ladas, F Borchert, S Franz, A Rehberg, N Strauch, KK Sommer, ... Health Informatics Journal 29 (2), 14604582231164696, 2023 | 5 | 2023 |
| Resolving Elliptical Compounds in German Medical Text N Kammer †, F Borchert †, S Winkler, G De Melo, MP Schapranow The 22nd Workshop on Biomedical Natural Language Processing and BioNLP …, 2023 | 4 | 2023 |
| Cross-Lingual Candidate Retrieval and Re-ranking for Biomedical Entity Linking F Borchert, I Llorca, MP Schapranow International Conference of the Cross-Language Evaluation Forum for European …, 2023 | 3 | 2023 |
| A Meta-dataset of German Medical Corpora: Harmonization of Annotations and Cross-corpus NER Evaluation I Llorca, F Borchert, MP Schapranow Proceedings of the 5th Clinical Natural Language Processing Workshop, 171-181, 2023 | 3 | 2023 |
| Controversial Trials First: Identifying Disagreement Between Clinical Guidelines and New Evidence F Borchert, L Meister, T Langer, M Follmann, B Arnrich, MP Schapranow AMIA Annual Symposium Proceedings 2021, 237, 2021 | 3 | 2021 |
| Extraction of Crohn’s Disease Clinical Phenotypes from Clinical Text Using Natural Language Processing L Schmidt, S Ibing, F Borchert, J Hugo, A Marshall, J Peraza, JH Cho, ... medRxiv, 2023.10. 16.23297099, 2023 | 2 | 2023 |
| An engineering approach towards multi-site virtual molecular tumor board software R Henkenjohann, B Bergner, F Borchert, N Bougatf, H Hund, R Eils, ... International Conference on ICT for Health, Accessibility and Wellbeing, 156-170, 2021 | 2 | 2021 |
| Machine Learning Based Prediction of Incident Cases of Crohn’s Disease Using Electronic Health Records from a Large Integrated Health System J Hugo, S Ibing, F Borchert, JP Sachs, J Cho, RC Ungaro, EP Böttinger International Conference on Artificial Intelligence in Medicine, 293-302, 2023 | 1 | 2023 |
| GGTWEAK: Gene Tagging with Weak Supervision for German Clinical Text S Steinwand †, F Borchert †, S Winkler, MP Schapranow International Conference on Artificial Intelligence in Medicine, 183-192, 2023 | 1 | 2023 |
| Electronic Health Records-based identification of newly diagnosed Crohn’s Disease cases S Ibing, J Hugo, F Borchert, L Schmidt, C Benson, AA Marshall, ... Artificial Intelligence in Medicine 159, 103032, 2025 | | 2025 |
Dr.-Ing. Matthieu-P. SchapranowGroup Leader & Sc. Manager Digital Health InnovationsVerified email at hpi.de