| Antibiotic-resistance genes in waste water A Karkman, TT Do, F Walsh, MPJ Virta Trends in microbiology 26 (3), 220-228, 2018 | 890 | 2018 |
| Community-led, integrated, reproducible multi-omics with anvi’o AM Eren, E Kiefl, A Shaiber, I Veseli, SE Miller, MS Schechter, I Fink, ... Nature microbiology 6 (1), 3-6, 2021 | 619 | 2021 |
| Fecal pollution can explain antibiotic resistance gene abundances in anthropogenically impacted environments A Karkman, K Pärnänen, DGJ Larsson Nature communications 10 (1), 80, 2019 | 559 | 2019 |
| Antibiotic resistance in European wastewater treatment plants mirrors the pattern of clinical antibiotic resistance prevalence KMM Pärnänen, C Narciso-da-Rocha, D Kneis, TU Berendonk, D Cacace, ... Science advances 5 (3), eaau9124, 2019 | 501 | 2019 |
| Maternal gut and breast milk microbiota affect infant gut antibiotic resistome and mobile genetic elements K Pärnänen, A Karkman, J Hultman, C Lyra, J Bengtsson-Palme, ... Nature communications 9 (1), 3891, 2018 | 469 | 2018 |
| Tetracycline resistance genes persist at aquaculture farms in the absence of selection pressure M Tamminen, A Karkman, A Lohmus, WI Muziasari, H Takasu, S Wada, ... Environmental science & technology 45 (2), 386-391, 2011 | 373 | 2011 |
| High-throughput quantification of antibiotic resistance genes from an urban wastewater treatment plant A Karkman, TA Johnson, C Lyra, RD Stedtfeld, M Tamminen, JM Tiedje, ... FEMS microbiology ecology 92 (3), fiw014, 2016 | 251 | 2016 |
| Host range of antibiotic resistance genes in wastewater treatment plant influent and effluent J Hultman, M Tamminen, K Pärnänen, J Cairns, A Karkman, M Virta FEMS microbiology ecology 94 (4), fiy038, 2018 | 206 | 2018 |
| Abundances of tetracycline, sulphonamide and beta-lactam antibiotic resistance genes in conventional wastewater treatment plants (WWTPs) with different waste load M Laht, A Karkman, V Voolaid, C Ritz, T Tenson, M Virta, V Kisand PloS one 9 (8), e103705, 2014 | 203 | 2014 |
| Aquaculture changes the profile of antibiotic resistance and mobile genetic element associated genes in Baltic Sea sediments WI Muziasari, K Pärnänen, TA Johnson, C Lyra, A Karkman, RD Stedtfeld, ... FEMS microbiology ecology 92 (4), fiw052, 2016 | 200 | 2016 |
| Influence of manure application on the environmental resistome under Finnish agricultural practice with restricted antibiotic use J Muurinen, R Stedtfeld, A Karkman, K Parnanen, J Tiedje, M Virta Environmental science & technology 51 (11), 5989-5999, 2017 | 181 | 2017 |
| Seasonality of antibiotic prescriptions for outpatients and resistance genes in sewers and wastewater treatment plant outflow S Caucci, A Karkman, D Cacace, M Rybicki, P Timpel, V Voolaid, R Gurke, ... FEMS microbiology ecology 92 (5), fiw060, 2016 | 160 | 2016 |
| Patterns in the skin microbiota differ in children and teenagers between rural and urban environments J Lehtimäki, A Karkman, T Laatikainen, L Paalanen, L von Hertzen, ... Scientific reports 7 (1), 45651, 2017 | 149 | 2017 |
| Sulphonamide and trimethoprim resistance genes persist in sediments at Baltic Sea aquaculture farms but are not detected in the surrounding environment WI Muziasari, S Managaki, K Pärnänen, A Karkman, C Lyra, M Tamminen, ... PLoS One 9 (3), e92702, 2014 | 144 | 2014 |
| Significant disparities in allergy prevalence and microbiota between the young people in Finnish and Russian Karelia L Ruokolainen, L Paalanen, A Karkman, T Laatikainen, L Von Hertzen, ... Clinical & Experimental Allergy 47 (5), 665-674, 2017 | 139 | 2017 |
| The ecology of human microbiota: dynamics and diversity in health and disease A Karkman, J Lehtimäki, L Ruokolainen Annals of the New York Academy of Sciences 1399 (1), 78-92, 2017 | 124 | 2017 |
| Community-led, integrated, reproducible multi-omics with anvi’o. Nat Microbiol 6: 3–6 AM Eren, E Kiefl, A Shaiber, I Veseli, SE Miller, MS Schechter, I Fink, ... | 115 | 2021 |
| “Every gene is everywhere but the environment selects”: global geolocalization of gene sharing in environmental samples through network analysis M Fondi, A Karkman, MV Tamminen, E Bosi, M Virta, R Fani, E Alm, ... Genome Biology and Evolution 8 (5), 1388-1400, 2016 | 115 | 2016 |
| Cold temperature decreases bacterial species richness in nitrogen‐removing bioreactors treating inorganic mine waters A Karkman, K Mattila, M Tamminen, M Virta Biotechnology and bioengineering 108 (12), 2876-2883, 2011 | 71 | 2011 |
| Evaluating the mobility potential of antibiotic resistance genes in environmental resistomes without metagenomics K Pärnänen, A Karkman, M Tamminen, C Lyra, J Hultman, L Paulin, ... Scientific reports 6 (1), 35790, 2016 | 61 | 2016 |
Marko VirtaUniversity of Helsinki, FinlandVerified email at helsinki.fi