| Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ... Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016 | 168 | 2016 |
| Docking-based inverse virtual screening: methods, applications, and challenges X Xu, M Huang, X Zou Biophysics Reports, 1-16, 2018 | 160 | 2018 |
| Community-wide assessment of protein-interface modeling suggests improvements to design methodology SJ Fleishman, TA Whitehead, EM Strauch, JE Corn, S Qin, HX Zhou, ... Journal of molecular biology 414 (2), 289-302, 2011 | 159 | 2011 |
| Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019 | 127 | 2019 |
| Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment MF Lensink, G Brysbaert, T Mauri, N Nadzirin, S Velankar, RAG Chaleil, ... Proteins: Structure, Function, and Bioinformatics 89 (12), 1800-1823, 2021 | 103 | 2021 |
| Fully blind docking at the atomic level for protein-peptide complex structure prediction C Yan, X Xu, X Zou Structure 24 (10), 1842-1853, 2016 | 94 | 2016 |
| MDockPeP: An ab‐initio protein–peptide docking server X Xu, C Yan, X Zou Journal of computational chemistry 39 (28), 2409-2413, 2018 | 81 | 2018 |
| Two-stage electro–mechanical coupling of a KV channel in voltage-dependent activation P Hou, PW Kang, AD Kongmeneck, ND Yang, Y Liu, J Shi, X Xu, ... Nature communications 11 (1), 676, 2020 | 59 | 2020 |
| Impact of AlphaFold on structure prediction of protein complexes: The CASP15‐CAPRI experiment MF Lensink, G Brysbaert, N Raouraoua, PA Bates, M Giulini, RV Honorato, ... Proteins: Structure, Function, and Bioinformatics 91 (12), 1658-1683, 2023 | 42 | 2023 |
| Protein–protein docking with binding site patch prediction and network‐based terms enhanced combinatorial scoring X Gong, P Wang, F Yang, S Chang, B Liu, H He, L Cao, X Xu, C Li, ... Proteins: Structure, Function, and Bioinformatics 78 (15), 3150-3155, 2010 | 42 | 2010 |
| A PIP2 substitute mediates voltage sensor-pore coupling in KCNQ activation Y Liu, X Xu, J Gao, MM Naffaa, H Liang, J Shi, HZ Wang, ND Yang, P Hou, ... Communications biology 3 (1), 385, 2020 | 32 | 2020 |
| Identification of key residues for protein conformational transition using elastic network model JG Su, X Jin Xu, C Hua Li, WZ Chen, CX Wang The Journal of chemical physics 135 (17), 2011 | 28 | 2011 |
| Thermal stability and unfolding pathways of Sso7d and its mutant F31A: Insight from molecular dynamics simulation X Xu, J Su, W Chen, C Wang Journal of Biomolecular Structure and Dynamics 28 (5), 717-727, 2011 | 24 | 2011 |
| Improving binding mode and binding affinity predictions of docking by ligand-based search of protein conformations: evaluation in D3R grand challenge 2015 X Xu, C Yan, X Zou Journal of computer-aided molecular design 31, 689-699, 2017 | 23 | 2017 |
| The interactions and recognition of cyclic peptide mimetics of Tat with HIV-1 TAR RNA: a molecular dynamics simulation study CH Li, ZC Zuo, JG Su, XJ Xu, CX Wang Journal of Biomolecular Structure and Dynamics 31 (3), 276-287, 2013 | 21 | 2013 |
| Predicting protein–peptide complex structures by accounting for peptide flexibility and the physicochemical environment X Xu, X Zou Journal of chemical information and modeling 62 (1), 27-39, 2021 | 17 | 2021 |
| Performance of MDockPP in CAPRI rounds 28‐29 and 31‐35 including the prediction of water‐mediated interactions X Xu, L Qiu, C Yan, Z Ma, SZ Grinter, X Zou Proteins: Structure, Function, and Bioinformatics 85 (3), 424-434, 2017 | 17 | 2017 |
| Lessons learned from participating in D3R 2016 Grand Challenge 2: compounds targeting the farnesoid X receptor R Duan, X Xu, X Zou Journal of computer-aided molecular design 32, 103-111, 2018 | 16 | 2018 |
| Detection of persistent organic pollutants binding modes with androgen receptor ligand binding domain by docking and molecular dynamics XJ Xu, JG Su, AR Bizzarri, S Cannistraro, M Liu, Y Zeng, WZ Chen, ... BMC structural biology 13, 1-9, 2013 | 15 | 2013 |
| An analysis of the influence of protein intrinsic dynamical properties on its thermal unfolding behavior JG Su, XJ Xu, CH Li, WZ Chen, CX Wang Journal of Biomolecular Structure and Dynamics 29 (1), 105-121, 2011 | 15 | 2011 |
Chengfei YanHuazhong University of Science and TechnologyVerified email at hust.edu.cn