| Squidpy: a scalable framework for spatial omics analysis G Palla, H Spitzer, M Klein, D Fischer, AC Schaar, LB Kuemmerle, ... Nature methods 19 (2), 171-178, 2022 | 600 | 2022 |
| Distinct molecular profiles of skull bone marrow in health and neurological disorders ZI Kolabas, LB Kuemmerle, R Perneczky, B Förstera, S Ulukaya, M Ali, ... Cell 186 (17), 3706-3725. e29, 2023 | 85* | 2023 |
| Clinical validation of saliency maps for understanding deep neural networks in ophthalmology MS Ayhan, LB Kümmerle, L Kühlewein, W Inhoffen, G Aliyeva, ... Medical Image Analysis 77, 102364, 2022 | 43 | 2022 |
| Optimizing Xenium In Situ data utility by quality assessment and best practice analysis workflows SM Salas, P Czarnewski, LB Kuemmerle, S Helgadottir, ... BioRxiv, 2023.02. 13.528102, 2023 | 37 | 2023 |
| The discovAIR project: a roadmap towards the Human Lung Cell Atlas MD Luecken, LE Zaragosi, E Madissoon, L Sikkema, AB Firsova, ... European Respiratory Journal 60 (2), 2022 | 20 | 2022 |
| Probe set selection for targeted spatial transcriptomics LB Kuemmerle, MD Luecken, AB Firsova, L Barros de Andrade e Sousa, ... Nature methods, 1-11, 2024 | 10 | 2024 |
| Potential of methods of artificial intelligence for quality assurance P Berens, SM Waldstein, MS Ayhan, L Kuemmerle, H Agostini, A Stahl, ... Der Ophthalmologe 117, 320-325, 2020 | 6* | 2020 |
| 2D, or not 2D? Investigating Vertical Signal Integrity of Tissue Slices S Tiesmeyer, N Müller-Bötticher, A Malt, B Long, S Marco Salas, ... bioRxiv, 2025.01. 13.632601, 2025 | | 2025 |
| A topographic lung cell atlas reveals regional variation in cell-type specific gene programs and identifies healthy and diseased cellular neighborhoods C Samakovlis, A Firsova, SM Salas, L Kümmerle, X Abalo, L Larsson, ... | | 2024 |
| Topographic atlas of cell states identifies regional gene expression in the adult human lung A Firsova, S Marco Salas, L Kuemmerle, X Abalo, L Larsson, ... | | 2024 |