| Visualizing and interpreting cancer genomics data via the Xena platform MJ Goldman, B Craft, M Hastie, K Repečka, F McDade, A Kamath, ... Nature biotechnology 38 (6), 675-678, 2020 | 3052 | 2020 |
| New developments on the Encyclopedia of DNA Elements (ENCODE) data portal Y Luo, BC Hitz, I Gabdank, JA Hilton, MS Kagda, B Lam, Z Myers, P Sud, ... Nucleic acids research 48 (D1), D882-D889, 2020 | 690 | 2020 |
| The UCSC Xena platform for public and private cancer genomics data visualization and interpretation M Goldman, B Craft, M Hastie, K Repečka, F McDade, A Kamath, ... biorxiv, 326470, 2018 | 578 | 2018 |
| Manipulation of nuclear architecture through CRISPR-mediated chromosomal looping SL Morgan, NC Mariano, A Bermudez, NL Arruda, F Wu, Y Luo, ... Nature communications 8 (1), 15993, 2017 | 312 | 2017 |
| The MCM8-MCM9 complex promotes RAD51 recruitment at DNA damage sites to facilitate homologous recombination J Park, DT Long, KY Lee, T Abbas, E Shibata, M Negishi, Y Luo, ... Molecular and cellular biology, 2013 | 134 | 2013 |
| Minichromosome maintenance helicase paralog MCM9 is dispensible for DNA replication but functions in germ-line stem cells and tumor suppression SA Hartford, Y Luo, TL Southard, IM Min, JT Lis, JC Schimenti Proceedings of the National Academy of Sciences 108 (43), 17702-17707, 2011 | 89 | 2011 |
| Annotating and prioritizing human non-coding variants with RegulomeDB v. 2 S Dong, N Zhao, E Spragins, MS Kagda, M Li, P Assis, O Jolanki, Y Luo, ... Nature genetics 55 (5), 724-726, 2023 | 81 | 2023 |
| Hypersensitivity of primordial germ cells to compromised replication-associated DNA repair involves ATM-p53-p21 signaling Y Luo, SA Hartford, R Zeng, TL Southard, N Shima, JC Schimenti PLoS genetics 10 (7), e1004471, 2014 | 68 | 2014 |
| Crystal structures of human BTG2 and mouse TIS21 involved in suppression of CAF1 deadenylase activity X Yang, M Morita, H Wang, T Suzuki, W Yang, Y Luo, C Zhao, Y Yu, ... Nucleic acids research 36 (21), 6872-6881, 2008 | 65 | 2008 |
| The ENCODE uniform analysis pipelines BC Hitz, L Jin-Wook, O Jolanki, MS Kagda, K Graham, P Sud, I Gabdank, ... Biorxiv, 2023 | 63 | 2023 |
| Honey bee Royalactin unlocks conserved pluripotency pathway in mammals DC Wan, SL Morgan, AL Spencley, N Mariano, EY Chang, G Shankar, ... Nature Communications 9 (1), 5078, 2018 | 34 | 2018 |
| The UCSC Xena platform for public and private cancer genomics data visualization and interpretation. bioRxiv, 326470 M Goldman, B Craft, M Hastie, K Repečka, F McDade, A Kamath, ... | 32 | 2019 |
| The ENCODE portal as an epigenomics resource J Jou, I Gabdank, Y Luo, K Lin, P Sud, Z Myers, JA Hilton, MS Kagda, ... Current protocols in bioinformatics 68 (1), e89, 2019 | 29 | 2019 |
| High resolution mapping and positional cloning of ENU-induced mutations in the Rw region of mouse chromosome 5 YH Ching, RJ Munroe, JL Moran, AK Barker, E Mauceli, T Fennell, ... BMC genetics 11, 1-10, 2010 | 27 | 2010 |
| Multicenter integrated analysis of noncoding CRISPRi screens D Yao, J Tycko, JW Oh, LR Bounds, SJ Gosai, L Lataniotis, ... Nature methods 21 (4), 723-734, 2024 | 26 | 2024 |
| MCM 9 deficiency delays primordial germ cell proliferation independent of the ATM pathway Y Luo, JC Schimenti Genesis 53 (11), 678-684, 2015 | 24 | 2015 |
| Manipulation of nuclear architecture through CRISPR-mediated chromosomal looping. Nat Commun 8: 15993 SL Morgan, NC Mariano, A Bermudez, NL Arruda, F Wu, Y Luo, ... | 17 | 2017 |
| PICSAR: Long Noncoding RNA in Cutaneous Squamous Cell Carcinoma Y Luo, SL Morgan, KC Wang The Journal of investigative dermatology 136 (8), 1541–1542, 2016 | 15 | 2016 |
| Data navigation on the ENCODE portal MS Kagda, B Lam, C Litton, C Small, CA Sloan, E Spragins, F Tanaka, ... arXiv preprint arXiv:2305.00006, 2023 | 13 | 2023 |
| CRISPR-mediated reorganization of chromatin loop structure SL Morgan, EY Chang, NC Mariano, A Bermudez, NL Arruda, F Wu, ... Journal of Visualized Experiments: Jove, 57457, 2018 | 5 | 2018 |
J. Michael CherryStanford University, Department of GeneticsVerified email at stanford.edu