| TimeTree 5: an expanded resource for species divergence times S Kumar, M Suleski, JM Craig, AE Kasprowicz, M Sanderford, M Li, ... Molecular biology and evolution 39 (8), msac174, 2022 | 714 | 2022 |
| An evolutionary portrait of the progenitor SARS-CoV-2 and its dominant offshoots in COVID-19 pandemic S Kumar, Q Tao, S Weaver, M Sanderford, MA Caraballo-Ortiz, S Sharma, ... Molecular Biology and Evolution 38 (8), 3046-3059, 2021 | 83 | 2021 |
| Evolutionary diagnosis method for variants in personal exomes S Kumar, M Sanderford, VE Gray, J Ye, L Liu Nature methods 9 (9), 855-856, 2012 | 70 | 2012 |
| Biological relevance of computationally predicted pathogenicity of noncoding variants L Liu, MD Sanderford, R Patel, P Chandrashekar, G Gibson, S Kumar Nature communications 10 (1), 330, 2019 | 51 | 2019 |
| MEGA-MD: molecular evolutionary genetics analysis software with mutational diagnosis of amino acid variation G Stecher, L Liu, M Sanderford, D Peterson, K Tamura, S Kumar Bioinformatics 30 (9), 1305-1307, 2014 | 41 | 2014 |
| Beaver and naked mole rat genomes reveal common paths to longevity X Zhou, Q Dou, G Fan, Q Zhang, M Sanderford, A Kaya, J Johnson, ... Cell reports 32 (4), 2020 | 34 | 2020 |
| A molecular evolutionary reference for the human variome L Liu, K Tamura, M Sanderford, VE Gray, S Kumar Molecular biology and evolution 33 (1), 245-254, 2015 | 28 | 2015 |
| Dynamic coupling of residues within proteins as a mechanistic foundation of many enigmatic pathogenic missense variants NJ Ose, BM Butler, A Kumar, IC Kazan, M Sanderford, S Kumar, ... PLoS computational biology 18 (4), e1010006, 2022 | 27 | 2022 |
| Functional, morphological, and evolutionary characterization of hearing in subterranean, eusocial African mole-rats SJ Pyott, M van Tuinen, LA Screven, KM Schrode, JP Bai, CM Barone, ... Current Biology 30 (22), 4329-4341. e4, 2020 | 24 | 2020 |
| Evolutionary meta-analysis of association studies reveals ancient constraints affecting disease marker discovery JT Dudley, R Chen, M Sanderford, AJ Butte, S Kumar Molecular biology and evolution 29 (9), 2087-2094, 2012 | 21 | 2012 |
| PathFinder: Bayesian inference of clone migration histories in cancer S Kumar, A Chroni, K Tamura, M Sanderford, O Oladeinde, V Aly, T Vu, ... Bioinformatics 36 (Supplement_2), i675-i683, 2020 | 17 | 2020 |
| Adaptive landscape of protein variation in human exomes R Patel, LB Scheinfeldt, MD Sanderford, TR Lanham, K Tamura, A Platt, ... Molecular biology and evolution 35 (8), 2015-2025, 2018 | 16 | 2018 |
| TreeMap: a structured approach to fine mapping of eQTL variants L Liu, P Chandrashekar, B Zeng, MD Sanderford, S Kumar, G Gibson Bioinformatics 37 (8), 1125-1134, 2021 | 10 | 2021 |
| TopHap: rapid inference of key phylogenetic structures from common haplotypes in large genome collections with limited diversity MA Caraballo-Ortiz, S Miura, M Sanderford, T Dolker, Q Tao, S Weaver, ... Bioinformatics 38 (10), 2719-2726, 2022 | 9 | 2022 |
| FlyExpress 7: An Integrated Discovery Platform To Study Coexpressed Genes Using in Situ Hybridization Images in Drosophila S Kumar, C Konikoff, M Sanderford, L Liu, S Newfeld, J Ye, RJ Kulathinal G3: Genes, Genomes, Genetics 7 (8), 2791-2797, 2017 | 9 | 2017 |
| Clone phylogenetics reveals metastatic tumor migrations, maps, and models A Chroni, S Miura, L Hamilton, T Vu, SG Gaffney, V Aly, S Karim, ... Cancers 14 (17), 4326, 2022 | 6 | 2022 |
| MEGA12: Molecular Evolutionary Genetic Analysis version 12 for adaptive and green computing S Kumar, G Stecher, M Suleski, M Sanderford, S Sharma, K Tamura Molecular Biology and Evolution 41 (12), msae263, 2024 | 5 | 2024 |
| Improving cellular phylogenies through the integrated use of mutation order and optimality principles S Miura, T Dolker, M Sanderford, S Kumar Computational and Structural Biotechnology Journal 21, 3894-3903, 2023 | 1 | 2023 |
| TimeTree 5: An Expanded Resource for Species Divergence Times M Sanderford, M Li, G Stecher, SB Hedges Mol. Biol. Evol 39, 2022 | 1 | 2022 |
| MyESL: Sparse learning in molecular evolution and phylogenetic analysis M Sanderford, S Sharma, G Stecher, J Liu, J Ye, S Kumar arXiv preprint arXiv:2501.04941, 2025 | | 2025 |
