| napari: a multi-dimensional image viewer for Python N Sofroniew, T Lambert, K Evans, J Nunez-Iglesias, G Bokota, P Winston, ... Zenodo, 2022 | 226* | 2022 |
| DaXi—high-resolution, large imaging volume and multi-view single-objective light-sheet microscopy B Yang, M Lange, A Millett-Sikking, X Zhao, J Bragantini, S VijayKumar, ... Nature methods 19 (4), 461-469, 2022 | 121* | 2022 |
| OME-Zarr: a cloud-optimized bioimaging file format with international community support J Moore, D Basurto-Lozada, S Besson, J Bogovic, J Bragantini, EM Brown, ... Histochemistry and Cell Biology 160 (3), 223-251, 2023 | 71 | 2023 |
| A multimodal zebrafish developmental atlas reveals the state-transition dynamics of late-vertebrate pluripotent axial progenitors M Lange, A Granados, S VijayKumar, J Bragantini, S Ancheta, YJ Kim, ... Cell 187 (23), 6742-6759. e17, 2024 | 53* | 2024 |
| Graph-based image segmentation using dynamic trees J Bragantini, SB Martins, C Castelo-Fernandez, AX Falcão Iberoamerican Congress on Pattern Recognition, 470-478, 2018 | 30 | 2018 |
| An adaptive probabilistic atlas for anomalous brain segmentation in MR images SB Martins, J Bragantini, AX Falcao, CL Yasuda Medical physics 46 (11), 4940-4950, 2019 | 14 | 2019 |
| Large-scale multi-hypotheses cell tracking using ultrametric contours maps J Bragantini, M Lange, L Royer European Conference on Computer Vision, 36-54, 2024 | 13 | 2024 |
| Grabber: a tool to improve convergence in interactive image segmentation J Bragantini, B Moura, AX Falcao, FAM Cappabianco Pattern Recognition Letters 140, 267-273, 2020 | 11 | 2020 |
| The role of optimum connectivity in image segmentation: Can the algorithm learn object information during the process? A Falcão, J Bragantini Discrete Geometry for Computer Imagery: 21st IAPR International Conference …, 2019 | 11 | 2019 |
| Single-cell transcriptional dynamics in a living vertebrate E Eck, B Moretti, BH Schlomann, J Bragantini, M Lange, X Zhao, ... bioRxiv, 2024 | 9 | 2024 |
| Rethinking interactive image segmentation: Feature space annotation J Bragantini, AX Falcão, L Najman Pattern Recognition 131, 108882, 2022 | 9 | 2022 |
| Ultrack: pushing the limits of cell tracking across biological scales J Bragantini, I Theodoro, X Zhao, TAPM Huijben, E Hirata-Miyasaki, ... bioRxiv, 2024 | 3 | 2024 |
| Interactive Image Segmentation: From Graph-based Algorithms to Feature-Space Annotation J Bragantini University of Campinas, 2021 | 2 | 2021 |
| Differential dynamic trees for interactive image segmentation IF Silva, AM Sousa, AX Falcão, J Bragantini 2022 26th International Conference on Pattern Recognition (ICPR), 4328-4334, 2022 | 1 | 2022 |
| inTRACKtive-A Web-Based Tool for Interactive Cell Tracking Visualization TAPM Huijben, AG Anderson III, A Sweet, E Hoops, C Larsen, K Awayan, ... bioRxiv, 2024.10. 18.618998, 2024 | | 2024 |
| Interactive image segmentation: from graph-based to algorithms to feature-space annotation= Segmentação interativa de imagens: de algoritmos baseados em grafos à anotação de … J Bragantini [sn], 2021 | | 2021 |
| Supplementary: Large-Scale Multi-Hypotheses Cell Tracking Using Ultrametric Contours Maps J Bragantini, M Lange, L Royer | | |
Merlin LangeChan Zuckerberg BiohubVerified email at czbiohub.org