| heatmaply: an R package for creating interactive cluster heatmaps for online publishing T Galili, A O’Callaghan, J Sidi, C Sievert Bioinformatics 34 (9), 1600-1602, 2018 | 543 | 2018 |
| A sensitive and affordable multiplex RT-qPCR assay for SARS-CoV-2 detection MAM Reijns, L Thompson, JC Acosta, HA Black, FJ Sanchez-Luque, ... PLoS biology 18 (12), e3001030, 2020 | 44 | 2020 |
| Species-specific regulation of angiogenesis by glucocorticoids reveals contrasting effects on inflammatory and angiogenic pathways R Morgan, J Keen, D Halligan, A O’Callaghan, R Andrew, D Livingstone, ... PLoS One 13 (2), e0192746, 2018 | 15 | 2018 |
| heatmaply: interactive cluster heat maps using ‘plotly’ T Galili, J Sidi, A O’Callaghan, Y Benjamini R package version 0.11 1, 2017 | 12 | 2017 |
| Open and reusable deep learning for pathology with WSInfer and QuPath JR Kaczmarzyk, A O’Callaghan, F Inglis, S Gat, T Kurc, R Gupta, E Bremer, ... NPJ Precision Oncology 8 (1), 9, 2024 | 11 | 2024 |
| Transcriptional dynamics of colorectal cancer risk associated variation at 11q23. 1 correlate with tuft cell abundance and marker expression in silico BT Harris, V Rajasekaran, JP Blackmur, A O’callaghan, K Donnelly, ... Scientific Reports 12 (1), 13609, 2022 | 10 | 2022 |
| InstanSeg: an embedding-based instance segmentation algorithm optimized for accurate, efficient and portable cell segmentation T Goldsborough, B Philps, A O'Callaghan, F Inglis, L Leplat, A Filby, ... arXiv preprint arXiv:2408.15954, 2024 | 4 | 2024 |
| BASiCS workflow: a step-by-step analysis of expression variability using single cell RNA sequencing data A O'Callaghan, N Eling, JC Marioni, CA Vallejos F1000Research 11, 59, 2024 | 1 | 2024 |
| A novel channel invariant architecture for the segmentation of cells and nuclei in multiplexed images using InstanSeg T Goldsborough, A O'Callaghan, F Inglis, L Leplat, A Filby, H Bilen, ... bioRxiv, 2024.09. 04.611150, 2024 | 1 | 2024 |
| Package ‘scRNAseq’ D Risso, M Cole, A Lun, A O'Callaghan, J Preussner, C Soneson, ... | | 2025 |
| GelGenie: an AI-powered framework for gel electrophoresis image analysis M Aquilina, NJW Wu, K Kwan, F Busic, J Dodd, L Nicolas-Saenz, ... bioRxiv, 2024.09. 06.611479, 2024 | | 2024 |
| Embracing heterogeneity in multi-donor scRNAseq data: scalable inference of multi-scale heterogenity A O’Callaghan The University of Edinburgh, 2022 | | 2022 |
| Scalable Inference of Transcriptional Variability with Basics A O'Callaghan, CA Vallejos Available at SSRN 5113761, 0 | | |