| Technology dictates algorithms: recent developments in read alignment M Alser, J Rotman, D Deshpande, K Taraszka, H Shi, PI Baykal, HT Yang, ... Genome biology 22 (1), 249, 2021 | 134 | 2021 |
| RNA-seq data science: From raw data to effective interpretation Frontiers in Genetics 14 (Sec. Computational Genomics), 2023 | 72 | 2023 |
| Unlocking capacities of genomics for the COVID-19 response and future pandemics S Knyazev, K Chhugani, V Sarwal, R Ayyala, H Singh, S Karthikeyan, ... Nature methods 19 (4), 374-380, 2022 | 59 | 2022 |
| Carbon fullerene and nanotube are probable binders to multiple targets of SARS-CoV-2: Insights from computational modeling and molecular dynamic simulation studies S Skariyachan, D Gopal, D Deshpande, A Joshi, A Uttarkar, V Niranjan Infection, Genetics and Evolution 96, 105155, 2021 | 29 | 2021 |
| Physicochemical and microbial pollution of a reservoir in South India and role of bacteriophage treatment to curtail drug-resistant bacterial pollution in water S Skariyachan, D Deshpande, A Joshi, N Subramanya, S Kale, ... Environmental Technology & Innovation 24, 102012, 2021 | 10 | 2021 |
| A comprehensive analysis of code and data availability in biomedical research D Deshpande, A Sarkar, R Guo, A Moore, N Darci-Maher, S Mangul OSF, 2021 | 10* | 2021 |
| Whole blood transcriptomics identifies subclasses of pediatric septic shock JO Yang, MS Zinter, M Pellegrini, MY Wong, K Gala, D Markovic, B Nadel, ... Critical Care 27 (1), 486, 2023 | 7 | 2023 |
| BOSC 2021, the 22nd Annual Bioinformatics Open Source Conference NL Harris, PJA Cock, CJ Fields, K Hokamp, J Maia, M Munoz-Torres, ... F1000Research 10, 2021 | 2 | 2021 |
| Pioneering computational culture within pharmacy schools by empowering students with data science and bioinformatics skills C Ronkowski, D Deshpande, N Sharma, M Vahed, YM Patel, ... American Journal of Pharmaceutical Education 89 (2), 101341, 2025 | | 2025 |
| The evolution of computational research in a data-centric world D Deshpande, K Chhugani, T Ramesh, M Pellegrini, S Shiffman, ... Cell 187 (17), 4449-4457, 2024 | | 2024 |
| Perceptual and technical barriers in sharing and formatting metadata accompanying omics studies YN Huang, MI Love, CF Ronkowski, D Deshpande, LM Schriml, ... arXiv preprint arXiv:2401.02965, 2023 | | 2023 |
| An analysis of the robustness and reproducibility of computational tools used in biomedical research D Deshpande, S Mangul University of Southern California, Los Angeles, 2021 | | 2021 |
| BOSC 2021, the 22nd Annual Bioinformatics Open Source Conference [version 1; peer review: not peer reviewed] NL Harris, PJA Cock, CJ Fields, K Hokamp, J Maia, M Munoz-Torres, ... | | 2021 |
Serghei MangulAssistant Professor at USCVerified email at usc.edu