Performance and soundness of simulation: a case study based on a cellular automaton for in-body spread of HIV T Köster, PJ Giabbanelli, A Uhrmacher 2020 Winter Simulation Conference (WSC), 2281-2292, 2020 | 14 | 2020 |
Optimizing discrete simulations of the spread of hiv-1 to handle billions of cells on a workstation PJ Giabbanelli, JA Devita, T Köster, JA Kohrt Proceedings of the 2020 ACM SIGSIM Conference on Principles of Advanced …, 2020 | 11 | 2020 |
Receptor/Raft ratio is a determinant for LRP6 phosphorylation and WNT/β-Catenin signaling F Haack, T Köster, AM Uhrmacher Frontiers in Cell and Developmental Biology 9, 706731, 2021 | 9 | 2021 |
Partial evaluation via code generation for static stochastic reaction network models T Köster, T Warnke, AM Uhrmacher Proceedings of the 2020 ACM SIGSIM Conference on Principles of Advanced …, 2020 | 9 | 2020 |
Generating fast specialized simulators for stochastic reaction networks via partial evaluation T Köster, T Warnke, AM Uhrmacher ACM Transactions on Modeling and Computer Simulation (TOMACS) 32 (2), 1-25, 2022 | 6 | 2022 |
Handling dynamic sets of reactions in stochastic simulation algorithms T Köster, AM Uhrmacher Proceedings of the 2018 ACM SIGSIM Conference on Principles of Advanced …, 2018 | 6 | 2018 |
Zero lookahead? Zero problem. The window racer algorithm P Andelfinger, T Köster, A Uhrmacher Proceedings of the 2023 ACM SIGSIM Conference on Principles of Advanced …, 2023 | 5 | 2023 |
Potential based, spatial simulation of dynamically nested particles T Köster, P Henning, AM Uhrmacher BMC bioinformatics 20, 1-16, 2019 | 5 | 2019 |
Inferring dependency graphs for agent-based models using aspect-oriented programming JN Kreikemeyer, T Köster, AM Uhrmacher, T Warnke 2021 Winter Simulation Conference (WSC), 1-12, 2021 | 3 | 2021 |
Design and evaluation of update schemes to optimize asynchronous Cellular Automata with random or cyclic orders J Li, T Köster, PJ Giabbanelli 2021 IEEE/ACM 25th International Symposium on Distributed Simulation and …, 2021 | 3 | 2021 |
GPU-Accelerated Simulation Ensembles of Stochastic Reaction Networks T Köster, L Herrmann, P Andelfinger, A Uhrmacher 2022 Winter Simulation Conference (WSC), 2570-2581, 2022 | 2 | 2022 |
Latency optimized execution of sequential simulators by parallel parameter optimization T Köster, NM Drüeke, AM Uhrmacher Proceedings of the 2018 Winter Simulation Conference, 4230-4231, 2018 | 2 | 2018 |
A fast embedded language for continuous-time agent-based simulation T Köster, O Reinhardt, M Hinsch, J Bijak, AM Uhrmacher Journal of Artificial Societies and Social Simulation 27 (1), 2024 | 1 | 2024 |
Comparing the effect of code optimizations on simulation runtime across synchronous cellular automata models of hiv J Li, PJ Giabbanelli, T Köster 2021 Winter Simulation Conference (WSC), 1-12, 2021 | 1 | 2021 |
Efficient Simulation of Nested Hollow Sphere Intersections: For Dynamically Nested Compartmental Models in Cell Biology T Köster, K Perumalla, A Uhrmacher Proceedings of the 2017 ACM SIGSIM Conference on Principles of Advanced …, 2017 | 1 | 2017 |
Combined particle and compartmental dynamics of cell-biological models using hollow spheres on the GPU T Köster University of Rostock, 2017 | 1 | 2017 |
Expressive rule-based modeling and fast simulation for dynamic compartments T Köster, P Henning, T Warnke, A Uhrmacher Plos one 19 (10), e0312813, 2024 | | 2024 |
Computational model of cell cell interaction in bone remodelling FJ Müller, F Haack, T Köster, AM Uhrmacher | | 2024 |
Efficient Abstraction and Execution of Stochastic Simulation Models T Köster University of Rostock, 2024 | | 2024 |
Expressive modeling and fast simulation for dynamic compartments T Köster, P Henning, T Warnke, A Uhrmacher bioRxiv, 2024.04. 02.587672, 2024 | | 2024 |