| pSuc-Lys: predict lysine succinylation sites in proteins with PseAAC and ensemble random forest approach J Jia, Z Liu, X Xiao, B Liu, KC Chou Journal of theoretical biology 394, 223-230, 2016 | 346 | 2016 |
| iPPI-Esml: an ensemble classifier for identifying the interactions of proteins by incorporating their physicochemical properties and wavelet transforms into PseAAC J Jia, Z Liu, X Xiao, B Liu, KC Chou Journal of theoretical biology 377, 47-56, 2015 | 303 | 2015 |
| iSuc-PseOpt: identifying lysine succinylation sites in proteins by incorporating sequence-coupling effects into pseudo components and optimizing imbalanced training dataset J Jia, Z Liu, X Xiao, B Liu, KC Chou Analytical biochemistry 497, 48-56, 2016 | 296 | 2016 |
| iDNA-Methyl: Identifying DNA methylation sites via pseudo trinucleotide composition Z Liu, X Xiao, WR Qiu, KC Chou Analytical biochemistry 474, 69-77, 2015 | 286 | 2015 |
| pRNAm-PC: Predicting N6-methyladenosine sites in RNA sequences via physical–chemical properties Z Liu, X Xiao, DJ Yu, J Jia, WR Qiu, KC Chou Analytical biochemistry 497, 60-67, 2016 | 285 | 2016 |
| iDrug-Target: predicting the interactions between drug compounds and target proteins in cellular networking via benchmark dataset optimization approach X Xiao, JL Min, WZ Lin, Z Liu, X Cheng, KC Chou Journal of Biomolecular Structure and Dynamics 33 (10), 2221-2233, 2015 | 251 | 2015 |
| pSumo-CD: predicting sumoylation sites in proteins with covariance discriminant algorithm by incorporating sequence-coupled effects into general PseAAC J Jia, L Zhang, Z Liu, X Xiao, KC Chou Bioinformatics 32 (20), 3133-3141, 2016 | 219 | 2016 |
| iCar-PseCp: identify carbonylation sites in proteins by Monte Carlo sampling and incorporating sequence coupled effects into general PseAAC J Jia, Z Liu, X Xiao, B Liu, KC Chou Oncotarget 7 (23), 34558, 2016 | 204 | 2016 |
| iPPBS-Opt: a sequence-based ensemble classifier for identifying protein-protein binding sites by optimizing imbalanced training datasets J Jia, Z Liu, X Xiao, B Liu, KC Chou Molecules 21 (1), 95, 2016 | 179 | 2016 |
| Identification of protein-protein binding sites by incorporating the physicochemical properties and stationary wavelet transforms into pseudo amino acid composition J Jia, Z Liu, X Xiao, B Liu, KC Chou Journal of Biomolecular Structure and Dynamics 34 (9), 1946-1961, 2016 | 165 | 2016 |
| iROS-gPseKNC: predicting replication origin sites in DNA by incorporating dinucleotide position-specific propensity into general pseudo nucleotide composition X Xiao, HX Ye, Z Liu, JH Jia, KC Chou Oncotarget 7 (23), 34180, 2016 | 141 | 2016 |
| TargetM6A: Identifying N6-Methyladenosine Sites From RNA Sequences via Position-Specific Nucleotide Propensities and a Support Vector Machine GQ Li, Z Liu, HB Shen, DJ Yu IEEE transactions on nanobioscience 15 (7), 674-682, 2016 | 89 | 2016 |
| Improving N6-methyladenosine site prediction with heuristic selection of nucleotide physical–chemical properties M Zhang, JW Sun, Z Liu, MW Ren, HB Shen, DJ Yu Analytical biochemistry 508, 104-113, 2016 | 54 | 2016 |
| Accurate RNA 5-methylcytosine site prediction based on heuristic physical-chemical properties reduction and classifier ensemble M Zhang, Y Xu, L Li, Z Liu, X Yang, DJ Yu Analytical biochemistry 550, 41-48, 2018 | 47 | 2018 |
| Improving prediction of extracellular matrix proteins using evolutionary information via a grey system model and asymmetric under-sampling technique M Kabir, S Ahmad, M Iqbal, ZNK Swati, Z Liu, DJ Yu Chemometrics and Intelligent Laboratory Systems 174, 22-32, 2018 | 28 | 2018 |
| iAFP-Ense: an ensemble classifier for identifying antifreeze protein by incorporating grey model and PSSM into PseAAC X Xiao, M Hui, Z Liu The Journal of membrane biology 249, 845-854, 2016 | 27 | 2016 |
| ULDNA: integrating unsupervised multi-source language models with LSTM-attention network for high-accuracy protein–DNA binding site prediction YH Zhu, Z Liu, Y Liu, Z Ji, DJ Yu Briefings in Bioinformatics 25 (2), bbae040, 2024 | 14 | 2024 |
| iCataly-PseAAC: identification of enzymes catalytic sites using sequence evolution information with grey model GM (2, 1) X Xiao, MJ Hui, Z Liu, WR Qiu The Journal of membrane biology 248, 1033-1041, 2015 | 12 | 2015 |
| Benchmark data for identifying DNA methylation sites via pseudo trinucleotide composition Z Liu, X Xiao, WR Qiu, KC Chou Data in brief 4, 87, 2015 | 8 | 2015 |
| TM-search: An efficient and effective tool for protein structure database search Z Liu, C Zhang, Q Zhang, Y Zhang, DJ Yu Journal of Chemical Information and Modeling 64 (3), 1043-1049, 2024 | 6 | 2024 |
Dong-Jun YuNanjing University of Science and TechnologyVerified email at njust.edu.cn