| Removing the hidden data dependency of DIA with predicted spectral libraries B Van Puyvelde, S Willems, R Gabriels, S Daled, L De Clerck, ... Proteomics 20 (3-4), 1900306, 2020 | 60 | 2020 |
| Cov-MS: a community-based template assay for mass-spectrometry-based protein detection in SARS-CoV-2 patients B Van Puyvelde, K Van Uytfanghe, O Tytgat, L Van Oudenhove, ... Jacs Au 1 (6), 750-765, 2021 | 41 | 2021 |
| A comprehensive LFQ benchmark dataset on modern day acquisition strategies in proteomics B Van Puyvelde, S Daled, S Willems, R Gabriels, A Gonzalez de Peredo, ... Scientific data 9 (1), 126, 2022 | 35 | 2022 |
| Universal spectrum explorer: a standalone (web-) application for cross-resource spectrum comparison T Schmidt, P Samaras, V Dorfer, C Panse, T Kockmann, L Bichmann, ... Journal of proteome research 20 (6), 3388-3394, 2021 | 34 | 2021 |
| Ferroptosis induction in multiple myeloma cells triggers DNA methylation and histone modification changes associated with cellular senescence E Logie, B Van Puyvelde, B Cuypers, A Schepers, H Berghmans, ... International journal of molecular sciences 22 (22), 12234, 2021 | 33 | 2021 |
| hSWATH: unlocking SWATH’s full potential for an untargeted histone perspective L De Clerck, S Willems, R Noberini, C Restellini, B Van Puyvelde, ... Journal of proteome research 18 (11), 3840-3849, 2019 | 21 | 2019 |
| Comprehensive histone epigenetics: A mass spectrometry based screening assay to measure epigenetic toxicity S Verhelst, L De Clerck, S Willems, B Van Puyvelde, S Daled, D Deforce, ... MethodsX 7, 101055, 2020 | 15 | 2020 |
| Histone sample preparation for bottom-up mass spectrometry: A roadmap to informed decisions S Daled, S Willems, B Van Puyvelde, L Corveleyn, S Verhelst, ... Proteomes 9 (2), 17, 2021 | 13 | 2021 |
| Micro‐topographies induce epigenetic reprogramming and quiescence in human mesenchymal stem cells S Vermeulen, B Van Puyvelde, L Bengtsson del Barrio, R Almey, ... Advanced Science 10 (1), 2203880, 2023 | 11 | 2023 |
| A large scale mass spectrometry-based histone screening for assessing epigenetic developmental toxicity S Verhelst, B Van Puyvelde, S Willems, S Daled, S Cornelis, L Corveleyn, ... Scientific reports 12 (1), 1256, 2022 | 10 | 2022 |
| Cov2MS: An Automated and Quantitative Matrix-Independent Assay for Mass Spectrometric Measurement of SARS-CoV-2 Nucleocapsid Protein B Van Puyvelde, K Van Uytfanghe, L Van Oudenhove, R Gabriels, ... Analytical Chemistry 94 (50), 17379-17387, 2022 | 8 | 2022 |
| Add mass spectrometry to the pandemic toolbox B Van Puyvelde, M Dhaenens Elife 10, e75471, 2021 | 8 | 2021 |
| Proceedings of the EuBIC-MS 2020 Developers’ Meeting C Ashwood, W Bittremieux, EW Deutsch, NT Doncheva, V Dorfer, ... EuPA Open Proteomics 24, 1-6, 2020 | 6 | 2020 |
| Ion-networks: a sparse data format capturing full data integrity of data independent acquisition mass spectrometry S Willems, S Daled, B Van Puyvelde, L De Clerck, S Vande Casteele, ... bioRxiv, 726273, 2019 | 6 | 2019 |
| An interactive mass spectrometry atlas of histone posttranslational modifications in T-cell acute leukemia L Provez, B Van Puyvelde, L Corveleyn, N Demeulemeester, S Verhelst, ... Scientific data 9 (1), 626, 2022 | 4 | 2022 |
| Acoustic ejection mass spectrometry empowers ultra-fast protein biomarker quantification B Van Puyvelde, CL Hunter, M Zhgamadze, S Savant, YO Wang, E Hoedt, ... Nature Communications 15 (1), 5114, 2024 | 3 | 2024 |
| Cov2MS: an automated matrix-independent assay for mass spectrometric detection and measurement of SARS-CoV-2 nucleocapsid protein in infectious patients B Van Puyvelde, K Van Uytfanghe, L Van Oudenhove, R Gabriels, ... medRxiv, 2022.02. 09.22270547, 2022 | 3 | 2022 |
| An experimental design to extract more information from MS-based histone studies L De Clerck, S Willems, S Daled, B Van Puyvelde, S Verhelst, ... Molecular omics 17 (6), 929-938, 2021 | 3 | 2021 |
| Histone Sample Preparation for Bottom-Up Mass Spectrometry: A Roadmap to Informed Decisions. Proteomes 2021, 9, 17 S Daled, S Willems, B Van Puyvelde, L Corveleyn, S Verhelst, ... s Note: MDPI stays neutral with regard to jurisdictional claims in published …, 2021 | 2 | 2021 |
| Proceedings of the EuBIC Winter School 2019 D Kopczynski, W Bittremieux, D Bouyssié, V Dorfer, M Locard-Paulet, ... EuPA open proteomics 22, 4-7, 2019 | 2 | 2019 |
