| Combining metabolic and protein engineering of a terpenoid biosynthetic pathway for overproduction and selectivity control E Leonard, PK Ajikumar, K Thayer, WH Xiao, JD Mo, B Tidor, ... Proceedings of the National Academy of Sciences 107 (31), 13654-13659, 2010 | 423 | 2010 |
| Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. I. Research design and results on d (CpG) steps DL Beveridge, G Barreiro, KS Byun, DA Case, TE Cheatham, SB Dixit, ... Biophysical journal 87 (6), 3799-3813, 2004 | 328 | 2004 |
| Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. II: sequence context effects on the dynamical structures of the 10 unique … SB Dixit, DL Beveridge, DA Case, TE Cheatham, E Giudice, F Lankas, ... Biophysical journal 89 (6), 3721-3740, 2005 | 278 | 2005 |
| Ion motions in molecular dynamics simulations on DNA SY Ponomarev, KM Thayer, DL Beveridge Proceedings of the National Academy of Sciences 101 (41), 14771-14775, 2004 | 268 | 2004 |
| Analyses of the effects of all ubiquitin point mutants on yeast growth rate BP Roscoe, KM Thayer, KB Zeldovich, D Fushman, DNA Bolon Journal of molecular biology 425 (8), 1363-1377, 2013 | 265 | 2013 |
| Molecular basis for drug resistance in HIV-1 protease A Ali, RM Bandaranayake, Y Cai, NM King, M Kolli, S Mittal, JF Murzycki, ... Viruses 2 (11), 2509, 2010 | 183 | 2010 |
| Molecular dynamics simulations of DNA curvature and flexibility: helix phasing and premelting DL Beveridge, SB Dixit, G Barreiro, KM Thayer Biopolymers: Original Research on Biomolecules 73 (3), 380-403, 2004 | 87 | 2004 |
| Molecular dynamics–Markov state model of protein ligand binding and Allostery in CRIB-PDZ: conformational selection and induced fit KM Thayer, B Lakhani, DL Beveridge The Journal of Physical Chemistry B 121 (22), 5509-5514, 2017 | 56 | 2017 |
| Hidden Markov models from molecular dynamics simulations on DNA KM Thayer, DL Beveridge Proceedings of the National Academy of Sciences 99 (13), 8642-8647, 2002 | 38 | 2002 |
| Evolutionary covariance combined with molecular dynamics predicts a framework for allostery in the MutS DNA mismatch repair protein B Lakhani, KM Thayer, MM Hingorani, DL Beveridge The Journal of Physical Chemistry B 121 (9), 2049-2061, 2017 | 31 | 2017 |
| Diversity of T cell epitopes in Plasmodium falciparum circumsporozoite protein likely due to protein-protein interactions NR Aragam, KM Thayer, N Nge, I Hoffman, F Martinson, D Kamwendo, ... PLoS One 8 (5), e62427, 2013 | 29 | 2013 |
| Molecular basis for differential patterns of drug resistance in influenza N1 and N2 neuraminidase KL Prachanronarong, A Özen, KM Thayer, LS Yilmaz, KB Zeldovich, ... Journal of chemical theory and computation 12 (12), 6098-6108, 2016 | 25 | 2016 |
| Spectral analysis of molecular dynamics simulations on PDZ: MD sectors B Lakhani, KM Thayer, E Black, DL Beveridge Journal of Biomolecular Structure and Dynamics 38 (3), 781-790, 2020 | 15 | 2020 |
| Estradiol induces allosteric coupling and partitioning of sex-hormone-binding globulin monomers among conformational states R Jasuja, D Spencer, A Jayaraj, L Peng, M Krishna, B Lawney, P Patel, ... Iscience 24 (6), 2021 | 12 | 2021 |
| Toward a universal structural and energetic model for prokaryotic promoters A Mishra, P Siwach, P Misra, B Jayaram, M Bansal, WK Olson, KM Thayer, ... Biophysical Journal 115 (7), 1180-1189, 2018 | 11 | 2018 |
| Arginine methylation regulates ribosome CAR function K Scopino, C Dalgarno, C Nachmanoff, D Krizanc, KM Thayer, MP Weir International Journal of Molecular Sciences 22 (3), 1335, 2021 | 10 | 2021 |
| GCN sensitive protein translation in yeast WA Barr, RB Sheth, J Kwon, J Cho, JW Glickman, F Hart, OK Chatterji, ... PloS one 15 (9), e0233197, 2020 | 10 | 2020 |
| Energetic landscape of MDM2-p53 interactions by computational mutagenesis of the MDM2-p53 interaction KM Thayer, GA Beyer PLoS One 11 (3), e0147806, 2016 | 10 | 2016 |
| p53 R175H hydrophobic patch and H‐bond reorganization observed by MD simulation KM Thayer, TR Quinn Biopolymers 105 (3), 176-185, 2016 | 9 | 2016 |
| Molecular dynamics of DNA and protein-DNA complexes: progress on sequence effects, conformational stability, axis curvature, and structural bioinformatics DL Beveridge, SB Dixit, KS Byun, G Barreiro, KM Thayer, S Ponomarev | 8 | 2004 |
David A CaseRutgers UniversityVerified email at biomaps.rutgers.edu