| Biogenesis, identification, and function of exonic circular RNAs I Chen, CY Chen, TJ Chuang Wiley Interdisciplinary Reviews: RNA 6 (5), 563-579, 2015 | 391 | 2015 |
| NCLscan: accurate identification of non-co-linear transcripts (fusion, trans-splicing and circular RNA) with a good balance between sensitivity and precision TJ Chuang, CS Wu, CY Chen, LY Hung, TW Chiang, MY Yang Nucleic acids research 44 (3), e29-e29, 2015 | 126 | 2015 |
| Integrative transcriptome sequencing identifies trans-splicing events with important roles in human embryonic stem cell pluripotency CS Wu, CY Yu, CY Chuang, M Hsiao, CF Kao, HC Kuo, TJ Chuang Genome research 24 (1), 25-36, 2014 | 118 | 2014 |
| Integrative transcriptome sequencing reveals extensive alternative trans-splicing and cis-backsplicing in human cells TJ Chuang, YJ Chen, CY Chen, TL Mai, YD Wang, CS Yeh, MY Yang, ... Nucleic acids research 46 (7), 3671-3691, 2018 | 81 | 2018 |
| Alternatively and constitutively spliced exons are subject to different evolutionary forces FC Chen, SS Wang, CJ Chen, WH Li, TJ Chuang Molecular biology and evolution 23 (3), 675-682, 2006 | 77 | 2006 |
| Human-specific insertions and deletions inferred from mammalian genome sequences FC Chen, CJ Chen, WH Li, TJ Chuang Genome research 17 (1), 16-22, 2007 | 70 | 2007 |
| Is an observed non-co-linear RNA product spliced in trans, in cis or just in vitro? CY Yu, HJ Liu, LY Hung, HC Kuo, TJ Chuang Nucleic acids research 42 (14), 9410-9423, 2014 | 64 | 2014 |
| New approach to image encryption TJ Chuang, JC Lin Journal of electronic imaging 7 (2), 350-356, 1998 | 64 | 1998 |
| Human p16γ, a novel transcriptional variant of p16INK4A, coexpresses with p16INK4A in cancer cells and inhibits cell-cycle progression YC Lin, MB Diccianni, Y Kim, HH Lin, CH Lee, RJ Lin, SH Joo, J Li, ... Oncogene 26 (49), 7017-7027, 2007 | 62 | 2007 |
| Genome-wide, integrative analysis of circular RNA dysregulation and the corresponding circular RNA-microRNA-mRNA regulatory axes in autism YJ Chen, CY Chen, TL Mai, CF Chuang, YC Chen, SK Gupta, L Yen, ... Genome Research 30 (3), 375-391, 2020 | 59 | 2020 |
| Position-dependent correlations between DNA methylation and the evolutionary rates of mammalian coding exons TJ Chuang, FC Chen, YZ Chen Proceedings of the National Academy of Sciences 109 (39), 15841-15846, 2012 | 54 | 2012 |
| A new multiresolution approach to still image encryption TJ Chuang, JC Lin Pattern Recognition and Image Analysis (Advances in Mathematical Theory and …, 1999 | 52 | 1999 |
| Transcriptomopathies of pre-and post-symptomatic frontotemporal dementia-like mice with TDP-43 depletion in forebrain neurons LS Wu, WC Cheng, CY Chen, MC Wu, YC Wang, YH Tseng, TJ Chuang, ... Acta neuropathologica communications 7, 1-31, 2019 | 49 | 2019 |
| Large-scale benchmarking of circRNA detection tools reveals large differences in sensitivity but not in precision M Vromman, J Anckaert, S Bortoluzzi, A Buratin, CY Chen, Q Chu, ... Nature methods 20 (8), 1159-1169, 2023 | 44 | 2023 |
| Identification and evolutionary analysis of novel exons and alternative splicing events using cross-species EST-to-genome comparisons in human, mouse and rat FC Chen, CJ Chen, JY Ho, TJ Chuang BMC bioinformatics 7, 1-14, 2006 | 39 | 2006 |
| Gene family size conservation is a good indicator of evolutionary rates FC Chen, CJ Chen, WH Li, TJ Chuang Molecular biology and evolution 27 (8), 1750-1758, 2010 | 34 | 2010 |
| Plant gene and alternatively spliced variant annotator. A plant genome annotation pipeline for rice gene and alternatively spliced variant identification with cross-species … FC Chen, SS Wang, SM Chaw, YT Huang, TJ Chuang Plant physiology 143 (3), 1086-1095, 2007 | 31 | 2007 |
| The relationships among microRNA regulation, intrinsically disordered regions, and other indicators of protein evolutionary rate SCC Chen, TJ Chuang, WH Li Molecular biology and evolution 28 (9), 2513-2520, 2011 | 30 | 2011 |
| Impacts of pretranscriptional DNA methylation, transcriptional transcription factor, and posttranscriptional microRNA regulations on protein evolutionary rate TJ Chuang, TW Chiang Genome biology and evolution 6 (6), 1530-1541, 2014 | 29 | 2014 |
| Scanning for the signatures of positive selection for human-specific insertions and deletions CH Chen, TJ Chuang, BY Liao, FC Chen Genome Biology and Evolution 1, 415-419, 2009 | 28 | 2009 |
