| Protein structure and sequence reanalysis of 2019-nCoV genome refutes snakes as its intermediate host and the unique similarity between its spike protein insertions and HIV-1 C Zhang, W Zheng, X Huang, EW Bell, X Zhou, Y Zhang Journal of proteome research 19 (4), 1351-1360, 2020 | 369 | 2020 |
| I-TASSER-MTD: a deep-learning-based platform for multi-domain protein structure and function prediction X Zhou, W Zheng, Y Li, R Pearce, C Zhang, EW Bell, G Zhang, Y Zhang Nature Protocols 17 (10), 2326-2353, 2022 | 308 | 2022 |
| Assembling multidomain protein structures through analogous global structural alignments X Zhou, J Hu, C Zhang, G Zhang, Y Zhang Proceedings of the National Academy of Sciences 116 (32), 15930-15938, 2019 | 111 | 2019 |
| Deducing high-accuracy protein contact-maps from a triplet of coevolutionary matrices through deep residual convolutional networks Y Li, C Zhang, EW Bell, W Zheng, X Zhou, DJ Yu, Y Zhang PLoS computational biology 17 (3), e1008865, 2021 | 90 | 2021 |
| Differential evolution with underestimation-based multimutation strategy XG Zhou, GJ Zhang IEEE transactions on cybernetics 49 (4), 1353-1364, 2018 | 62 | 2018 |
| Protein structure prediction using deep learning distance and hydrogen‐bonding restraints in CASP14 W Zheng, Y Li, C Zhang, X Zhou, R Pearce, EW Bell, X Huang, Y Zhang Proteins: Structure, Function, and Bioinformatics 89 (12), 1734-1751, 2021 | 60 | 2021 |
| TargetDBP: accurate DNA-binding protein prediction via sequence-based multi-view feature learning J Hu, XG Zhou, YH Zhu, DJ Yu, GJ Zhang IEEE/ACM transactions on computational biology and bioinformatics 17 (4 …, 2019 | 60 | 2019 |
| FUpred: detecting protein domains through deep-learning-based contact map prediction W Zheng, X Zhou, Q Wuyun, R Pearce, Y Li, Y Zhang Bioinformatics 36 (12), 3749-3757, 2020 | 54 | 2020 |
| Underestimation-assisted global-local cooperative differential evolution and the application to protein structure prediction XG Zhou, CX Peng, J Liu, Y Zhang, GJ Zhang IEEE transactions on evolutionary computation 24 (3), 536-550, 2019 | 54 | 2019 |
| Secondary structure and contact guided differential evolution for protein structure prediction GJ Zhang, LF Ma, XQ Wang, XG Zhou IEEE/ACM transactions on computational biology and bioinformatics 17 (3 …, 2018 | 54 | 2018 |
| Abstract convex underestimation assisted multistage differential evolution XG Zhou, GJ Zhang IEEE transactions on cybernetics 47 (9), 2730-2741, 2017 | 51 | 2017 |
| Progressive assembly of multi-domain protein structures from cryo-EM density maps X Zhou, Y Li, C Zhang, W Zheng, G Zhang, Y Zhang Nature Computational Science 2 (3), 265-275, 2022 | 40 | 2022 |
| DeepUMQA: ultrafast shape recognition-based protein model quality assessment using deep learning SS Guo, J Liu, XG Zhou, GJ Zhang Bioinformatics 38 (7), 1895-1903, 2022 | 39 | 2022 |
| Enhancing protein conformational space sampling using distance profile-guided differential evolution GJ Zhang, XG Zhou, XF Yu, XH Hao, L Yu IEEE/ACM transactions on computational biology and bioinformatics 14 (6 …, 2016 | 35 | 2016 |
| LOMETS3: Integrating deep learning and profile alignment for advanced protein template recognition and function annotation W Zheng, Q Wuyun, X Zhou, Y Li, PL Freddolino, Y Zhang Nucleic acids research 50 (W1), W454-W464, 2022 | 34 | 2022 |
| A novel differential evolution algorithm using local abstract convex underestimate strategy for global optimization X Zhou, G Zhang, X Hao, L Yu Computers & Operations Research 75, 132-149, 2016 | 34 | 2016 |
| Protein structure and folding pathway prediction based on remote homologs recognition using PAthreader K Zhao, Y Xia, F Zhang, X Zhou, SZ Li, G Zhang Communications biology 6 (1), 243, 2023 | 33 | 2023 |
| CGLFold: a contact-assisted de novo protein structure prediction using global exploration and loop perturbation sampling algorithm J Liu, XG Zhou, Y Zhang, GJ Zhang Bioinformatics 36 (8), 2443-2450, 2020 | 30 | 2020 |
| MMpred: a distance-assisted multimodal conformation sampling for de novo protein structure prediction KL Zhao, J Liu, XG Zhou, JZ Su, Y Zhang, GJ Zhang Bioinformatics 37 (23), 4350-4356, 2021 | 24 | 2021 |
| Protein inter‐residue contact and distance prediction by coupling complementary coevolution features with deep residual networks in CASP14 Y Li, C Zhang, W Zheng, X Zhou, EW Bell, DJ Yu, Y Zhang Proteins: Structure, Function, and Bioinformatics 89 (12), 1911-1921, 2021 | 22 | 2021 |
Yang ZhangNational University of SingaporeVerified email at nus.edu.sg