| Are Escherichia coli Pathotypes Still Relevant in the Era of Whole-Genome Sequencing? RM Robins-Browne, KE Holt, DJ Ingle, DM Hocking, J Yang, M Tauschek Frontiers in cellular and infection microbiology 6, 141, 2016 | 220 | 2016 |
| In silico serotyping of E. coli from short read data identifies limited novel O-loci but extensive diversity of O:H serotype combinations within and between pathogenic … DJ Ingle, M Valcanis, A Kuzevski, M Tauschek, M Inouye, T Stinear, ... Microbial genomics 2 (7), e000064, 2016 | 200 | 2016 |
| EspL is a bacterial cysteine protease effector that cleaves RHIM proteins to block necroptosis and inflammation JS Pearson, C Giogha, S Mühlen, U Nachbur, CLL Pham, Y Zhang, ... Nature microbiology 2 (4), 1-10, 2017 | 193 | 2017 |
| Co-circulation of Multidrug-resistant Shigella Among Men Who Have Sex With Men in Australia DJ Ingle, M Easton, M Valcanis, T Seemann, JC Kwong, N Stephens, ... Clinical Infectious Diseases 69 (9), 1535-1544, 2019 | 110 | 2019 |
| Dynamics of antimicrobial resistance in intestinal Escherichia coli from children in community settings in South Asia and sub-Saharan Africa DJ Ingle, MM Levine, KL Kotloff, KE Holt, RM Robins-Browne Nature Microbiology 3 (9), 1063-1073, 2018 | 108 | 2018 |
| Bridging of Neisseria gonorrhoeae lineages across sexual networks in the HIV pre-exposure prophylaxis era DA Williamson, EPF Chow, CL Gorrie, T Seemann, DJ Ingle, N Higgins, ... Nature communications 10 (1), 3988, 2019 | 100 | 2019 |
| Evolution of atypical enteropathogenic E. coli by repeated acquisition of LEE pathogenicity island variants DJ Ingle, M Tauschek, DJ Edwards, DM Hocking, DJ Pickard, ... Nature microbiology 1 (2), 1-9, 2016 | 89 | 2016 |
| Biofilm formation by and thermal niche and virulence characteristics of Escherichia spp DJ Ingle, O Clermont, D Skurnik, E Denamur, ST Walk, DM Gordon Applied and environmental microbiology 77 (8), 2695-2700, 2011 | 82 | 2011 |
| Informal genomic surveillance of regional distribution of Salmonella Typhi genotypes and antimicrobial resistance via returning travellers DJ Ingle, S Nair, H Hartman, PM Ashton, ZA Dyson, M Day, J Freedman, ... PLOS Neglected Tropical Diseases 13 (9), 2019 | 77 | 2019 |
| Repeated local emergence of carbapenem-resistant Acinetobacter baumannii in a single hospital ward MB Schultz, D Pham Thanh, N Tran Do Hoan, RR Wick, DJ Ingle, ... Microbial genomics 2 (3), e000050, 2016 | 73 | 2016 |
| Evolutionary dynamics of multidrug resistant Salmonella enterica serovar 4,[5],12:i:- in Australia DJ Ingle, RL Ambrose, SL Baines, S Duchene, A Gonçalves da Silva, ... Nature Communications 12 (1), 4786, 2021 | 62 | 2021 |
| Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei J Hawkey, K Paranagama, KS Baker, RJ Bengtsson, FX Weill, ... Nature communications 12 (1), 2684, 2021 | 62 | 2021 |
| Key parameters for genomics-based real-time detection and tracking of multidrug-resistant bacteria: a systematic analysis CL Gorrie, AG Da Silva, DJ Ingle, C Higgs, T Seemann, TP Stinear, ... The Lancet Microbe 2 (11), e575-e583, 2021 | 60 | 2021 |
| Prolonged Outbreak of Multidrug-Resistant Shigella sonnei Harboring blaCTX-M-27 in Victoria, Australia DJ Ingle, P Andersson, M Valcanis, J Barnden, AG da Silva, KA Horan, ... Antimicrobial Agents and Chemotherapy 64 (12), 10.1128/aac. 01518-20, 2020 | 51 | 2020 |
| Global diversity and antimicrobial resistance of typhoid fever pathogens: Insights from a meta-analysis of 13,000 Salmonella Typhi genomes ME Carey, ZA Dyson, DJ Ingle, A Amir, MK Aworh, MA Chattaway, ... Elife 12, e85867, 2023 | 47* | 2023 |
| Characterisation of Treponema pallidum lineages within the contemporary syphilis outbreak in Australia: a genomic epidemiological analysis ML Taouk, G Taiaroa, S Pasricha, S Herman, EPF Chow, F Azzatto, ... The Lancet Microbe 3 (6), e417-e426, 2022 | 41 | 2022 |
| Genomic analysis of fluoroquinolone-and tetracycline-resistant Campylobacter jejuni sequence type 6964 in humans and poultry, New Zealand, 2014–2016 NP French, J Zhang, GP Carter, AC Midwinter, PJ Biggs, K Dyet, BJ Gilpin, ... Emerging Infectious Diseases 25 (12), 2226, 2019 | 38 | 2019 |
| The evolution and international spread of extensively drug resistant Shigella sonnei LCE Mason, DR Greig, LA Cowley, SR Partridge, E Martinez, ... nature communications 14 (1), 1983, 2023 | 34 | 2023 |
| Development of phylodynamic methods for bacterial pathogens DJ Ingle, BP Howden, S Duchene Trends in Microbiology 29 (9), 788-797, 2021 | 34 | 2021 |
| Extensively drug-resistant shigellosis in Australia among men who have sex with men D Williamson, D Ingle, B Howden New England Journal of Medicine 381 (25), 2477-2479, 2019 | 32 | 2019 |
Benjamin HowdenProfessor and Director, Microbiological Diagnostic Unit, University of Melbourne at The DohertyVerified email at unimelb.edu.au