The Tabula Sapiens: A multiple-organ, single-cell transcriptomic atlas of humans The Tabula Sapiens Consortium*, RC Jones, J Karkanias, MA Krasnow, ... Science 376 (6594), eabl4896, 2022 | 690 | 2022 |
A sandbox for prediction and integration of DNA, RNA, and proteins in single cells MD Luecken, DB Burkhardt, R Cannoodt, C Lance, A Agrawal, H Aliee, ... Thirty-fifth conference on neural information processing systems datasets …, 2021 | 106 | 2021 |
Imaging cell lineage with a synthetic digital recording system KHK Chow, MW Budde, AA Granados, M Cabrera, S Yoon, S Cho, ... Science 372 (6538), eabb3099, 2021 | 105 | 2021 |
Distributed and dynamic intracellular organization of extracellular information AA Granados, JMJ Pietsch, SA Cepeda-Humerez, IL Farquhar, G Tkačik, ... Proceedings of the National Academy of Sciences 115 (23), 6088-6093, 2018 | 74 | 2018 |
Distributing tasks via multiple input pathways increases cellular survival in stress AA Granados, MM Crane, LF Montano-Gutierrez, RJ Tanaka, M Voliotis, ... Elife 6, e21415, 2017 | 58 | 2017 |
A multimodal zebrafish developmental atlas reveals the state-transition dynamics of late-vertebrate pluripotent axial progenitors M Lange, A Granados, S VijayKumar, J Bragantini, S Ancheta, YJ Kim, ... Cell 187 (23), 6742-6759. e17, 2024 | 51* | 2024 |
Benchmarked approaches for reconstruction of in vitro cell lineages and in silico models of C. elegans and M. musculus developmental trees W Gong, AA Granados, J Hu, MG Jones, O Raz, I Salvador-Martínez, ... Cell systems 12 (8), 810-826. e4, 2021 | 48 | 2021 |
Combinatorial expression motifs in signaling pathways AA Granados, N Kanrar, MB Elowitz Cell Genomics 4 (1), 2024 | 13 | 2024 |
Single-nuclei characterization of pervasive transcriptional signatures across organs in response to COVID-19 AA Granados, S Bucher, H Song, A Agrawal, AT Chen, T Peng, N Neff, ... Elife 12, e81090, 2023 | 5* | 2023 |
Developmental origin and local signals cooperate to determine septal astrocyte identity Y Xie, CM Reid, AA Granados, MT Garcia, F Dale-Huang, SM Hanson, ... bioRxiv, 2023 | 4 | 2023 |
Schwann cell-secreted PGE2 promotes sensory neuron excitability during development H Kantarci, PD Elvira, AP Thottumkara, EM O’Connell, M Iyer, LJ Donovan, ... Cell 187 (17), 4690-4712. e30, 2024 | 3* | 2024 |
Challenges and Progress in RNA Velocity: Comparative Analysis Across Multiple Biological Contexts S Ancheta, L Dorman, G Le Treut, A Gurung, LA Royer, A Granados, ... bioRxiv, 2024.06. 25.600667, 2024 | 2 | 2024 |
Tutorial: guidelines for manual cell type annotation of single-cell multi-omics datasets using interactive software YJ Kim, A Tarashansky, K Liang, M Urisko, L Dorman, M Borja, N Neff, ... bioRxiv, 2023.07. 11.548639, 2023 | 2 | 2023 |
Single-nucleus RNA sequencing provides insights into the GL261-GSC syngeneic mouse model of glioblastoma L Garcia-Vicente, M Borja, V Tran, A Alvarez-Vazquez, ... bioRxiv, 2023.10. 26.564166, 2023 | 2 | 2023 |
Generative Models Validation via Manifold Recapitulation Analysis N Lazzaro, G Leonardi, R Marchesi, M Datres, A Saiani, J Tessadori, ... bioRxiv, 2024.10. 23.619602, 2024 | | 2024 |
Zebrahub-Multiome: Uncovering Gene Regulatory Network Dynamics During Zebrafish Embryogenesis YJ Kim, S VijayKumar, B Iovino, A Granados, S Ancheta, X Zhao, ... bioRxiv, 2024.10. 18.618987, 2024 | | 2024 |
Distributing Intracellular Tasks to Survive Stress AA Granados, PS Swain CELL SYSTEMS 5 (1), 3-3, 2017 | | 2017 |
Quantitative analysis of cellular perception in eukaryotic signalling networks AA Granados Castro Imperial College London, 2017 | | 2017 |
Dynamic environments reveal specialized roles in the HOG network A Granados, M Crane, L Montaño, M Voliotis, R Tanaka, P Swain | | |