| Human leukocyte antigen susceptibility map for severe acute respiratory syndrome coronavirus 2 A Nguyen, JK David, SK Maden, MA Wood, BR Weeder, A Nellore, ... Journal of virology 94 (13), 10.1128/jvi. 00510-20, 2020 | 631 | 2020 |
| Discovery of methylated circulating DNA biomarkers for comprehensive non-invasive monitoring of treatment response in metastatic colorectal cancer L Barault, A Amatu, G Siravegna, A Ponzetti, S Moran, A Cassingena, ... Gut, gutjnl-2016-313372, 2017 | 234 | 2017 |
| Senescence‐associated tissue microenvironment promotes colon cancer formation through the secretory factor GDF15 Y Guo, JL Ayers, KT Carter, T Wang, SK Maden, D Edmond, ... Aging cell 18 (6), e13013, 2019 | 92 | 2019 |
| Dysfunctional epigenetic aging of the normal colon and colorectal cancer risk T Wang, SK Maden, GE Luebeck, CI Li, PA Newcomb, CM Ulrich, ... Clinical epigenetics 12, 1-9, 2020 | 63 | 2020 |
| Subtypes of Barrett’s oesophagus and oesophageal adenocarcinoma based on genome-wide methylation analysis M Yu, SK Maden, M Stachler, AM Kaz, J Ayers, Y Guo, KT Carter, ... Gut 68 (3), 389-399, 2019 | 49 | 2019 |
| Implications of epigenetic drift in colorectal neoplasia GE Luebeck, WD Hazelton, K Curtius, SK Maden, M Yu, KT Carter, ... Cancer research 79 (3), 495-504, 2019 | 33 | 2019 |
| Dietary fatty acid intake is associated with paraoxonase 1 activity in a cohort-based analysis of 1,548 subjects DS Kim, SK Maden, AA Burt, JE Ranchalis, CE Furlong, GP Jarvik Lipids in health and Disease 12, 1-9, 2013 | 31 | 2013 |
| Identification of a key role of widespread epigenetic drift in Barrett’s esophagus and esophageal adenocarcinoma EG Luebeck, K Curtius, WD Hazelton, S Maden, M Yu, PN Thota, DT Patil, ... Clinical epigenetics 9, 1-10, 2017 | 28 | 2017 |
| Challenges and opportunities to computationally deconvolve heterogeneous tissue with varying cell sizes using single cell RNA-sequencing datasets SK Maden, SH Kwon, LA Huuki-Myers, L Collado-Torres, SC Hicks, ... arXiv preprint arXiv:2305.06501, 2023 | 24 | 2023 |
| Human methylome variation across Infinium 450K data on the Gene Expression Omnibus SK Maden, RF Thompson, KD Hansen, A Nellore NAR Genomics and Bioinformatics 3 (2), lqab025, 2021 | 17 | 2021 |
| Retained introns in long RNA-seq reads are not reliably detected in sample-matched short reads JK David, SK Maden, MA Wood, RF Thompson, A Nellore Genome Biology 23 (1), 2022 | 15 | 2022 |
| Putatively cancer-specific exon–exon junctions are shared across patients and present in developmental and other non-cancer cells JK David, SK Maden, BR Weeder, RF Thompson, A Nellore NAR cancer 2 (1), zcaa001, 2020 | 15 | 2020 |
| Human leukocyte antigen susceptibility map for SARS-CoV-2 [published online ahead of print April 17, 2020] A Nguyen, JK David, SK Maden J Virol 510, 20, 0 | 14 | |
| Human Leukocyte Antigen Susceptibility Map for Severe Acute Respiratory Syndrome Coronavirus 2 JKD Austin Nguyen, SK Maden, MA Wood, BR Weeder, A Nellore, ... Journal of Virology 94 (13), e00510-20, 2020 | 7 | 2020 |
| Benchmark of cellular deconvolution methods using a multi-assay reference dataset from postmortem human prefrontal cortex LA Huuki-Myers, KD Montgomery, SH Kwon, S Cinquemani, NJ Eagles, ... BioRxiv, 2024 | 4 | 2024 |
| recountmethylation enables flexible analysis of public blood DNA methylation array data SK Maden, B Walsh, K Ellrott, KD Hansen, RF Thompson, A Nellore Bioinformatics Advances 3 (1), vbad020, 2023 | 4 | 2023 |
| Human leukocyte antigen susceptibility map for SARS-CoV-2 (preprint) A Nguyen, JK David, SK Maden, MA Wood, BR Weeder, A Nellore, ... medRxiv, 2020 | 2 | 2020 |
| Consensus Machine Learning for Gene Target Selection in Pediatric AML Risk J Smith, SK Maden, D Lee, R Buie, V Peddu, R Shean, B Busby BioRxiv, 632166, 2019 | 2 | 2019 |
| lute: estimating the cell composition of heterogeneous tissue with varying cell sizes using gene expression SK Maden, LA Huuki-Myers, SH Kwon, L Collado-Torres, KR Maynard, ... BioRxiv, 2024 | 1 | 2024 |
| Package ‘recountmethylation’ SK Maden, RF Thompson, KD Hansen, A Nellore dim (mdp) 1 (2), 19, 2021 | | 2021 |
Reid F. ThompsonOregon Health & Science UniversityVerified email at ohsu.edu