| Thermodynamics of apoplastocyanin folding: comparison between experimental and theoretical results T Yoshidome, M Kinoshita, S Hirota, N Baden, M Terazima The Journal of chemical physics 128 (22), 2008 | 96 | 2008 |
| Molecular mechanism of pressure denaturation of proteins Y Harano, T Yoshidome, M Kinoshita The Journal of chemical physics 129 (14), 2008 | 92 | 2008 |
| Pressure effects on structures formed by entropically driven self-assembly: illustration for denaturation of proteins T Yoshidome, Y Harano, M Kinoshita Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 79 (1 …, 2009 | 66 | 2009 |
| Hydrophobicity at low temperatures and cold denaturation of a protein T Yoshidome, M Kinoshita Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 79 (3 …, 2009 | 56 | 2009 |
| Computational methods for configurational entropy using internal and Cartesian coordinates S Hikiri, T Yoshidome, M Ikeguchi Journal of chemical theory and computation 12 (12), 5990-6000, 2016 | 55 | 2016 |
| Rotation Mechanism of F1-ATPase: Crucial Importance of the Water Entropy Effect T Yoshidome, Y Ito, M Ikeguchi, M Kinoshita Journal of the American Chemical Society 133 (11), 4030-4039, 2011 | 50 | 2011 |
| Effects of side-chain packing on the formation of secondary structures in protein folding S Yasuda, T Yoshidome, H Oshima, R Kodama, Y Harano, M Kinoshita The Journal of chemical physics 132 (6), 2010 | 50 | 2010 |
| Theoretical analysis on thermal stability of a protein focused on the water entropy K Amano, T Yoshidome, Y Harano, K Oda, M Kinoshita Chemical Physics Letters 474 (1-3), 190-194, 2009 | 50 | 2009 |
| A theoretical analysis on characteristics of protein structures induced by cold denaturation H Oshima, T Yoshidome, K Amano, M Kinoshita The Journal of chemical physics 131 (20), 2009 | 49 | 2009 |
| Molecular origin of the negative heat capacity of hydrophilic hydration M Kinoshita, T Yoshidome The Journal of chemical physics 130 (14), 2009 | 48 | 2009 |
| Physical origin of hydrophobicity studied in terms of cold denaturation of proteins: comparison between water and simple fluids T Yoshidome, M Kinoshita Physical Chemistry Chemical Physics 14 (42), 14554-14566, 2012 | 47 | 2012 |
| Effects of heme on the thermal stability of mesophilic and thermophilic cytochromes c: comparison between experimental and theoretical results K Oda, R Kodama, T Yoshidome, M Yamanaka, Y Sambongi, M Kinoshita The Journal of chemical physics 134 (2), 2011 | 43 | 2011 |
| Free energy landscape approach to glass transition T Odagaki, T Yoshidome, A Koyama, A Yoshimori Journal of non-crystalline solids 352 (42-49), 4843-4846, 2006 | 40 | 2006 |
| Entropic potential field formed for a linear-motor protein near a filament: Statistical-mechanical analyses using simple models K Amano, T Yoshidome, M Iwaki, M Suzuki, M Kinoshita The Journal of chemical physics 133 (4), 2010 | 39 | 2010 |
| Free‐energy function based on an all‐atom model for proteins T Yoshidome, K Oda, Y Harano, R Roth, Y Sugita, M Ikeguchi, ... Proteins: Structure, Function, and Bioinformatics 77 (4), 950-961, 2009 | 34 | 2009 |
| Specific heat anomaly at the glass transition T Odagaki, T Yoshidome, T Tao, A Yoshimori The Journal of chemical physics 117 (22), 10151-10155, 2002 | 31 | 2002 |
| Free‐energy function for discriminating the native fold of a protein from misfolded decoys S Yasuda, T Yoshidome, Y Harano, R Roth, H Oshima, K Oda, Y Sugita, ... Proteins: Structure, Function, and Bioinformatics 79 (7), 2161-2171, 2011 | 29 | 2011 |
| Structural characteristics of yeast F1-ATPase before and after 16-degree rotation of the γ subunit: theoretical analysis focused on the water-entropy effect T Yoshidome, Y Ito, N Matubayasi, M Ikeguchi, M Kinoshita The Journal of Chemical Physics 137 (3), 2012 | 26 | 2012 |
| Molecular Dynamics Simulations of Yeast F1-ATPase before and after 16° Rotation of the γ Subunit Y Ito, T Yoshidome, N Matubayasi, M Kinoshita, M Ikeguchi The Journal of Physical Chemistry B 117 (12), 3298-3307, 2013 | 24 | 2013 |
| Crucial importance of the water-entropy effect in predicting hot spots in protein–protein complexes H Oshima, S Yasuda, T Yoshidome, M Ikeguchi, M Kinoshita Physical Chemistry Chemical Physics 13 (36), 16236-16246, 2011 | 24 | 2011 |
