| A revised airway epithelial hierarchy includes CFTR-expressing ionocytes DT Montoro, AL Haber, M Biton, V Vinarsky, B Lin, SE Birket, F Yuan, ... Nature 560 (7718), 319-324, 2018 | 1234 | 2018 |
| Intra-and inter-cellular rewiring of the human colon during ulcerative colitis CS Smillie, M Biton, J Ordovas-Montanes, KM Sullivan, G Burgin, ... Cell 178 (3), 714-730. e22, 2019 | 1094 | 2019 |
| A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors M Slyper, CBM Porter, O Ashenberg, J Waldman, E Drokhlyansky, ... Nature medicine 26 (5), 792-802, 2020 | 564 | 2020 |
| Spatially organized multicellular immune hubs in human colorectal cancer K Pelka, M Hofree, JH Chen, S Sarkizova, JD Pirl, V Jorgji, A Bejnood, ... Cell 184 (18), 4734-4752. e20, 2021 | 465 | 2021 |
| A single-cell landscape of high-grade serous ovarian cancer B Izar, I Tirosh, EH Stover, I Wakiro, MS Cuoco, I Alter, C Rodman, ... Nature medicine 26 (8), 1271-1279, 2020 | 382 | 2020 |
| Expansion sequencing: Spatially precise in situ transcriptomics in intact biological systems S Alon, DR Goodwin, A Sinha, AT Wassie, F Chen, ER Daugharthy, ... Science 371 (6528), eaax2656, 2021 | 362 | 2021 |
| Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics C Muus, MD Luecken, G Eraslan, L Sikkema, A Waghray, G Heimberg, ... Nature medicine 27 (3), 546-559, 2021 | 340 | 2021 |
| Single-cell RNA-seq reveals cell type–specific molecular and genetic associations to lupus RK Perez, MG Gordon, M Subramaniam, MC Kim, GC Hartoularos, S Targ, ... Science 376 (6589), eabf1970, 2022 | 301 | 2022 |
| Single-nucleus cross-tissue molecular reference maps toward understanding disease gene function G Eraslan, E Drokhlyansky, S Anand, E Fiskin, A Subramanian, M Slyper, ... Science 376 (6594), eabl4290, 2022 | 286 | 2022 |
| Integrated analyses of single-cell atlases reveal age, gender, and smoking status associations with cell type-specific expression of mediators of SARS-CoV-2 viral entry and … C Muus, MD Luecken, G Eraslan, A Waghray, G Heimberg, L Sikkema, ... BioRxiv, 2020.04. 19.049254, 2020 | 264 | 2020 |
| Single-nucleus and spatial transcriptome profiling of pancreatic cancer identifies multicellular dynamics associated with neoadjuvant treatment WL Hwang, KA Jagadeesh, JA Guo, HI Hoffman, P Yadollahpour, ... Nature genetics 54 (8), 1178-1191, 2022 | 224 | 2022 |
| Single cell census of human kidney organoids shows reproducibility and diminished off-target cells after transplantation A Subramanian, EH Sidhom, M Emani, K Vernon, N Sahakian, Y Zhou, ... Nature communications 10 (1), 5462, 2019 | 177 | 2019 |
| Nuclei multiplexing with barcoded antibodies for single-nucleus genomics JT Gaublomme, B Li, C McCabe, A Knecht, Y Yang, E Drokhlyansky, ... Nature communications 10 (1), 2907, 2019 | 159 | 2019 |
| Joint single-cell measurements of nuclear proteins and RNA in vivo H Chung, CN Parkhurst, EM Magee, D Phillips, E Habibi, F Chen, ... Nature methods 18 (10), 1204-1212, 2021 | 108 | 2021 |
| Single-nucleus and spatial transcriptomics of archival pancreatic cancer reveals multi-compartment reprogramming after neoadjuvant treatment WL Hwang, KA Jagadeesh, JA Guo, HI Hoffman, P Yadollahpour, ... BioRxiv, 2020.08. 25.267336, 2020 | 39 | 2020 |
| Inference of single cell profiles from histology stains with the Single-Cell omics from Histology Analysis Framework (SCHAF) C Comiter, ED Vaishnav, M Ciampricotti, B Li, Y Yang, SJ Rodig, M Turner, ... BioRxiv, 2023.03. 21.533680, 2023 | 28 | 2023 |
| Simultaneous single cell measurements of intranuclear proteins and gene expression H Chung, CN Parkhurst, EM Magee, D Phillips, E Habibi, F Chen, ... BioRxiv, 2021.01. 18.427139, 2021 | 23 | 2021 |
| Author Correction: A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors M Slyper, CBM Porter, O Ashenberg, J Waldman, E Drokhlyansky, ... Nature Medicine 26 (8), 1307-1307, 2020 | 21 | 2020 |
| RAAS blockade, kidney disease, and expression of ACE2, the entry receptor for SARS-CoV-2, in kidney epithelial and endothelial cells A Subramanian, KA Vernon, M Slyper, J Waldman, MD Luecken, K Gosik, ... bioRxiv, 2020.06. 23.167098, 2020 | 15 | 2020 |
| SnFFPE-Seq: Towards scalable single nucleus RNA-Seq of formalin-fixed paraffin-embedded (FFPE) tissue H Chung, A Melnikov, C McCabe, E Drokhlyansky, N Van Wittenberghe, ... bioRxiv, 2022.08. 25.505257, 2022 | 13 | 2022 |