| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 18313 | 2019 |
| Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin NA Bokulich, BD Kaehler, JR Rideout, M Dillon, E Bolyen, R Knight, ... Microbiome 6, 1-17, 2018 | 4606 | 2018 |
| RESCRIPt: Reproducible sequence taxonomy reference database management MS Robeson, DR O’Rourke, BD Kaehler, M Ziemski, MR Dillon, JT Foster, ... PLoS computational biology 17 (11), e1009581, 2021 | 603 | 2021 |
| q2-sample-classifier: machine-learning tools for microbiome classification and regression NA Bokulich, MR Dillon, E Bolyen, BD Kaehler, GA Huttley, JG Caporaso Journal of open research software 3 (30), 2018 | 183 | 2018 |
| Species abundance information improves sequence taxonomy classification accuracy BD Kaehler, NA Bokulich, D McDonald, R Knight, JG Caporaso, ... Nature communications 10 (1), 1-10, 2019 | 127 | 2019 |
| Measuring the microbiome: Best practices for developing and benchmarking microbiomics methods NA Bokulich, M Ziemski, MS Robeson II, BD Kaehler Computational and Structural Biotechnology Journal 18, 4048-4062, 2020 | 67 | 2020 |
| redbiom: a rapid sample discovery and feature characterization system. mSystems 4: e00215-19 D McDonald, B Kaehler, A Gonzalez, J DeReus, G Ackermann, C Marotz, ... | 39* | 2019 |
| Multivariate subordination using generalised Gamma convolutions with applications to Variance Gamma processes and option pricing B Buchmann, B Kaehler, R Maller, A Szimayer Stochastic Processes and their Applications 127 (7), 2208-2242, 2017 | 30 | 2017 |
| Beating naive bayes at taxonomic classification of 16S rRNA gene sequences M Ziemski, T Wisanwanichthan, NA Bokulich, BD Kaehler Frontiers in Microbiology 12, 644487, 2021 | 27 | 2021 |
| Genetic distance for a general non-stationary Markov substitution process BD Kaehler, VB Yap, R Zhang, GA Huttley Systematic biology 64 (2), 281-293, 2015 | 26 | 2015 |
| Optimizing taxonomic classification of marker gene sequences NA Bokulich, BD Kaehler, JR Rideout, M Dillon, E Bolyen, R Knight, ... PeerJ Preprints, 2017 | 18 | 2017 |
| Standard codon substitution models overestimate purifying selection for nonstationary data BD Kaehler, VB Yap, GA Huttley Genome biology and evolution 9 (1), 134-149, 2017 | 13 | 2017 |
| Folding behavior of four silks of giant honey bee reflects the evolutionary conservation of aculeate silk proteins J Maitip, HE Trueman, BD Kaehler, GA Huttley, P Chantawannakul, ... Insect biochemistry and molecular biology 59, 72-79, 2015 | 13 | 2015 |
| Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops MR Dillon, E Bolyen, A Adamov, A Belk, E Borsom, Z Burcham, ... PLoS computational biology 17 (6), e1009056, 2021 | 5 | 2021 |
| Full reconstruction of non-stationary strand-symmetric models on rooted phylogenies BD Kaehler Journal of Theoretical Biology 420, 144-151, 2017 | 5 | 2017 |
| Did aculeate silk evolve as an antifouling material? TD Sutherland, A Sriskantha, TD Rapson, BD Kaehler, GA Huttley Plos one 13 (9), e0203948, 2018 | 3 | 2018 |
| Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-ASV-classifier plugin. Microbiome 6: 90 NA Bokulich, BD Kaehler, JR Rideout, MR Dillon, E Bolyen, R Knight, ... | 3 | 2018 |
| Option pricing for alternative risky asset price models, and model verification results B Kaehler The Australian National University, 2009 | 3 | 2009 |
| Al ghalith E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet GA, 0 | 2 | |
| New insights from modelling studies and molecular dynamics simulations of the DIS5‐S6 extracellular linker of the skeletal muscle sodium channel NaV1.4 A Robinson, E Tao, T Neeman, B Kaehler, B Corry Biopolymers 114 (7), e23540, 2023 | 1 | 2023 |
Gavin HuttleyProfessor of Computational Genomics, Australian National UniversityVerified email at anu.edu.au