| Chromosome-scale shotgun assembly using an in vitro method for long-range linkage NH Putnam, BL O'Connell, JC Stites, BJ Rice, M Blanchette, R Calef, ... Genome research 26 (3), 342-350, 2016 | 786 | 2016 |
| The Human Tumor Atlas Network: charting tumor transitions across space and time at single-cell resolution O Rozenblatt-Rosen, A Regev, P Oberdoerffer, T Nawy, A Hupalowska, ... Cell 181 (2), 236-249, 2020 | 455 | 2020 |
| Loss of epigenetic information as a cause of mammalian aging JH Yang, M Hayano, PT Griffin, JA Amorim, MS Bonkowski, ... Cell 186 (2), 305-326. e27, 2023 | 436 | 2023 |
| Deeply conserved synteny resolves early events in vertebrate evolution REGDSR Oleg Simakov, Ferdinand Marlétaz, Jia-Xing Yue, Brendan O’Connell ... Nature Ecology & Evolution 4, 820–830, 2020 | 305 | 2020 |
| Improved reference genome for the domestic horse increases assembly contiguity and composition TS Kalbfleisch, ES Rice, MS DePriest, BP Walenz, MS Hestand, ... Communications biology 1 (1), 1-8, 2018 | 253 | 2018 |
| Natural selection shaped the rise and fall of passenger pigeon genomic diversity GGR Murray, AER Soares, BJ Novak, NK Schaefer, JA Cahill, AJ Baker, ... Science 358 (6365), 951-954, 2017 | 141 | 2017 |
| Deeply conserved synteny and the evolution of metazoan chromosomes O Simakov, J Bredeson, K Berkoff, F Marletaz, T Mitros, DT Schultz, ... Science Advances 8 (5), eabi5884, 2022 | 129 | 2022 |
| Puma genomes from North and South America provide insights into the genomic consequences of inbreeding NF Saremi, MA Supple, A Byrne, JA Cahill, LL Coutinho, L Dalén, ... Nature communications 10 (1), 1-10, 2019 | 109 | 2019 |
| Epigenetic maintenance of topological domains in the highly rearranged gibbon genome NH Lazar, KA Nevonen, B O'Connell, C McCann, RJ O'Neill, RE Green, ... Genome research 28 (7), 983-997, 2018 | 109 | 2018 |
| High-content single-cell combinatorial indexing RM Mulqueen, D Pokholok, BL O’Connell, CA Thornton, F Zhang, ... Nature biotechnology 39 (12), 1574-1580, 2021 | 71 | 2021 |
| Squeezing water from a stone: high-throughput sequencing from a 145-year old holotype resolves (barely) a cryptic species problem in flying lizards JA McGuire, DD Cotoras, B O’Connell, SZS Lawalata, CY Wang-Claypool, ... PeerJ 6, e4470, 2018 | 54 | 2018 |
| Improved genome assembly of American alligator genome reveals conserved architecture of estrogen signaling ES Rice, S Kohno, JS John, S Pham, J Howard, LF Lareau, BL O'Connell, ... Genome research 27 (5), 686-696, 2017 | 47 | 2017 |
| High-throughput robust single-cell DNA methylation profiling with sciMETv2 RV Nichols, BL O’Connell, RM Mulqueen, J Thomas, AR Woodfin, ... Nature Communications 13 (1), 1-10, 2022 | 31 | 2022 |
| Three-dimensional genome architecture persists in a 52,000-year-old woolly mammoth skin sample M Sandoval-Velasco, O Dudchenko, JA Rodríguez, CP Estrada, ... Cell 187 (14), 3541-3562. e51, 2024 | 13 | 2024 |
| Atlas-scale single-cell chromatin accessibility using nanowell-based combinatorial indexing BL O'Connell, RV Nichols, D Pokholok, J Thomas, SN Acharya, A Nishida, ... Genome Research, gr. 276655.122, 2023 | 6 | 2023 |
| An Annotated Draft Genome for the Andean Bear, Tremarctos ornatus NF Saremi, J Oppenheimer, C Vollmers, B O’Connell, SA Milne, A Byrne, ... Journal of Heredity 112 (4), 377-384, 2021 | 6 | 2021 |
| The complete mitochondrial genome of the black surfperch, Embiotoca jacksoni: Selection and substitution rates among surfperches (Embiotocidae) GC Longo, B O'Connell, RE Green, G Bernardi Marine genomics 28, 107-112, 2016 | 5 | 2016 |
| sciMET-cap: high-throughput single-cell methylation analysis with a reduced sequencing burden SN Acharya, RV Nichols, LE Rylaarsdam, BL O’Connell, TP Braun, ... Genome biology 25 (1), 186, 2024 | 4 | 2024 |
| Accessible high-throughput single-cell whole-genome sequencing with paired chromatin accessibility K Queitsch, TW Moore, BL O’Connell, RV Nichols, JL Muschler, C Lopez, ... Cell Reports Methods, 100625, 2023 | 3 | 2023 |
| Single-cell DNA methylation analysis tool Amethyst reveals distinct noncanonical methylation patterns in human glial cells LE Rylaarsdam, RV Nichols, BL O'Connell, S Coleman, G Yardimci, ... bioRxiv, 2024.08. 13.607670, 2024 | 2 | 2024 |
Richard E. GreenProf of Biomolecular Engineering, UCSC, UC Santa Cruz Genomics InstituteVerified email at soe.ucsc.edu