| A dynamic nomenclature proposal for SARS-CoV-2 lineages to assist genomic epidemiology A Rambaut, EC Holmes, Á O’Toole, V Hill, JT McCrone, C Ruis, ... Nature microbiology 5 (11), 1403-1407, 2020 | 2919 | 2020 |
| Assessing transmissibility of SARS-CoV-2 lineage B. 1.1. 7 in England E Volz, S Mishra, M Chand, JC Barrett, R Johnson, L Geidelberg, ... Nature 593 (7858), 266-269, 2021 | 1858* | 2021 |
| Rapid epidemic expansion of the SARS-CoV-2 Omicron variant in southern Africa R Viana, S Moyo, DG Amoako, H Tegally, C Scheepers, CL Althaus, ... Nature 603 (7902), 679-686, 2022 | 1648 | 2022 |
| Evaluating the effects of SARS-CoV-2 spike mutation D614G on transmissibility and pathogenicity E Volz, V Hill, JT McCrone, A Price, D Jorgensen, Á O’Toole, J Southgate, ... Cell 184 (1), 64-75. e11, 2021 | 1177 | 2021 |
| Assignment of epidemiological lineages in an emerging pandemic using the pangolin tool Á O’Toole, E Scher, A Underwood, B Jackson, V Hill, JT McCrone, ... Virus evolution 7 (2), veab064, 2021 | 1043 | 2021 |
| Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK L Du Plessis*, JT McCrone*, AE Zarebsk*i, V Hill*, C Ruis*, B Gutierrez, ... Science 371 (6530), 708-712, 2021 | 456* | 2021 |
| The emergence of sars-cov-2 in europe and north america M Worobey, J Pekar, BB Larsen, MI Nelson, V Hill, JB Joy, A Rambaut, ... Science 370 (6516), 564-570, 2020 | 451 | 2020 |
| Genomic epidemiology of SARS-CoV-2 in Guangdong province, China J Lu*, L du Plessis*, Z Liu*, V Hill*, M Kang, H Lin, J Sun, S François, ... Cell 181 (5), 997-1003. e9, 2020 | 294 | 2020 |
| Generation and transmission of interlineage recombinants in the SARS-CoV-2 pandemic B Jackson, MF Boni, MJ Bull, A Colleran, RM Colquhoun, AC Darby, ... Cell 184 (20), 5179-5188. e8, 2021 | 241 | 2021 |
| Tracking the international spread of SARS-CoV-2 lineages B. 1.1. 7 and B. 1.351/501Y-V2 with grinch Á O'Toole*, V Hill*, OG Pybus, A Watts, II Bogoch, K Khan, JP Messina, ... Wellcome Open Research 6, 2021 | 207 | 2021 |
| Spatiotemporal invasion dynamics of SARS-CoV-2 lineage B. 1.1. 7 emergence MUG Kraemer*, V Hill*, C Ruis*, S Dellicour*, S Bajaj*, JT McCrone, ... Science 373 (6557), 889-895, 2021 | 172 | 2021 |
| Accommodating individual travel history and unsampled diversity in Bayesian phylogeographic inference of SARS-CoV-2 P Lemey, SL Hong, V Hill, G Baele, C Poletto, V Colizza, Á O’toole, ... Nature communications 11 (1), 5110, 2020 | 172* | 2020 |
| Bayesian estimation of past population dynamics in BEAST 1.10 using the Skygrid coalescent model V Hill, G Baele Molecular biology and evolution 36 (11), 2620-2628, 2019 | 133 | 2019 |
| The origins and molecular evolution of SARS-CoV-2 lineage B. 1.1. 7 in the UK V Hill, L Du Plessis, TP Peacock, D Aggarwal, R Colquhoun, AM Carabelli, ... Virus Evolution 8 (2), veac080, 2022 | 117 | 2022 |
| Genomic epidemiology reveals multiple introductions of SARS-CoV-2 from mainland Europe into Scotland A da Silva Filipe, JG Shepherd, T Williams, J Hughes, E Aranday-Cortes, ... Nature Microbiology 6 (1), 112-122, 2021 | 117 | 2021 |
| Context-specific emergence and growth of the SARS-CoV-2 Delta variant JT McCrone*, V Hill*, S Bajaj*, RE Pena*, BC Lambert, R Inward, S Bhatt, ... Nature 610 (7930), 154-160, 2022 | 105 | 2022 |
| Accelerated SARS-CoV-2 intrahost evolution leading to distinct genotypes during chronic infection C Chaguza, AM Hahn, ME Petrone, S Zhou, D Ferguson, MI Breban, ... Cell Reports Medicine 4 (2), 2023 | 83 | 2023 |
| Progress and challenges in virus genomic epidemiology V Hill, C Ruis, S Bajaj, OG Pybus, MUG Kraemer Trends in Parasitology 37 (12), 1038-1049, 2021 | 82 | 2021 |
| CLIMB-COVID: continuous integration supporting decentralised sequencing for SARS-CoV-2 genomic surveillance SM Nicholls, R Poplawski, MJ Bull, A Underwood, M Chapman, ... Genome biology 22, 1-21, 2021 | 78 | 2021 |
| Toward a global virus genomic surveillance network V Hill, G Githinji, CBF Vogels, AI Bento, C Chaguza, CVF Carrington, ... Cell Host & Microbe 31 (6), 861-873, 2023 | 56 | 2023 |
