| An overview of methods for reconstructing 3-D chromosome and genome structures from Hi-C data O Oluwadare, M Highsmith, J Cheng Biological procedures online 21, 1-20, 2019 | 145 | 2019 |
| A maximum likelihood algorithm for reconstructing 3D structures of human chromosomes from chromosomal contact data O Oluwadare, Y Zhang, J Cheng BMC genomics 19, 1-17, 2018 | 64 | 2018 |
| ClusterTAD: an unsupervised machine learning approach to detecting topologically associated domains of chromosomes from Hi-C data O Oluwadare, J Cheng BMC bioinformatics 18 (1), 480, 2017 | 60 | 2017 |
| GMOL: an interactive tool for 3D genome structure visualization J Nowotny, A Wells, O Oluwadare, L Xu, R Cao, T Trieu, C He, J Cheng Scientific reports 6 (1), 1-8, 2016 | 39 | 2016 |
| GenomeFlow: a comprehensive graphical tool for modeling and analyzing 3D genome structure T Trieu, O Oluwadare, J Wopata, J Cheng Bioinformatics 35 (8), 1416-1418, 2019 | 32 | 2019 |
| Hierarchical reconstruction of high-resolution 3D models of large chromosomes T Trieu, O Oluwadare, J Cheng Scientific reports 9 (1), 4971, 2019 | 27 | 2019 |
| Iterative reconstruction of three-dimensional models of human chromosomes from chromosomal contact data J Nowotny, S Ahmed, L Xu, O Oluwadare, H Chen, N Hensley, T Trieu, ... BMC bioinformatics 16, 1-19, 2015 | 25 | 2015 |
| GSDB: a database of 3D chromosome and genome structures reconstructed from Hi-C data O Oluwadare, M Highsmith, D Turner, E Lieberman Aiden, J Cheng BMC molecular and cell biology 21, 1-10, 2020 | 19 | 2020 |
| EnsembleSplice: ensemble deep learning model for splice site prediction V Akpokiro, T Martin, O Oluwadare BMC bioinformatics 23 (1), 413, 2022 | 14 | 2022 |
| HiCARN: resolution enhancement of Hi-C data using cascading residual networks P Hicks, O Oluwadare Bioinformatics 38 (9), 2414-2421, 2022 | 10 | 2022 |
| HiC-GNN: A generalizable model for 3D chromosome reconstruction using graph convolutional neural networks V Hovenga, J Kalita, O Oluwadare Computational and Structural Biotechnology Journal 21, 812-836, 2023 | 9 | 2023 |
| DeepSplicer: an improved method of splice sites prediction using deep learning V Akpokiro, O Oluwadare, J Kalita 2021 20th IEEE International Conference on Machine Learning and Applications …, 2021 | 9 | 2021 |
| Deep learning for denoising hi-c chromosomal contact data M Highsmith, O Oluwadare, J Cheng bioRxiv, 692558, 2019 | 7 | 2019 |
| Gait analysis on a smart floor for health monitoring O Oluwadare The University of Texas at Arlington, 2015 | 7 | 2015 |
| CNNSplice: Robust models for splice site prediction using convolutional neural networks V Akpokiro, HMAM Chowdhury, S Olowofila, R Nusrat, O Oluwadare Computational and Structural Biotechnology Journal 21, 3210-3223, 2023 | 5 | 2023 |
| ChromeBat: A bio-inspired approach to 3D genome reconstruction B Collins, O Oluwadare, P Brown Genes 12 (11), 1757, 2021 | 4 | 2021 |
| ParticleChromo3D: a Particle Swarm Optimization algorithm for chromosome 3D structure prediction from Hi-C data D Vadnais, M Middleton, O Oluwadare BioData Mining 15 (1), 19, 2022 | 3 | 2022 |
| TADMaster: a comprehensive web-based tool for the analysis of topologically associated domains S Higgins, V Akpokiro, A Westcott, O Oluwadare BMC bioinformatics 23 (1), 463, 2022 | 2 | 2022 |
| Comparative study on chromatin loop callers using Hi-C data reveals their effectiveness HMAM Chowdhury, T Boult, O Oluwadare BMC bioinformatics 25 (1), 123, 2024 | 1 | 2024 |
| ParticleChromo3D+: a web server for ParticleChromo3D algorithm for 3D chromosome structure reconstruction D Vadnais, O Oluwadare Current Issues in Molecular Biology 45 (3), 2549-2560, 2023 | 1 | 2023 |
Jianlin ChengCurators' Distinguished Professor, University of MissouriVerified email at missouri.edu
