| miRTarBase 2020: updates to the experimentally validated microRNA–target interaction database HY Huang, YCD Lin, J Li, KY Huang, S Shrestha, HC Hong, Y Tang, ... Nucleic acids research 48 (D1), D148-D154, 2020 | 1351 | 2020 |
| dbPTM in 2019: exploring disease association and cross-talk of post-translational modifications KY Huang, TY Lee, HJ Kao, CT Ma, CC Lee, TH Lin, WC Chang, ... Nucleic acids research 47 (D1), D298-D308, 2019 | 237 | 2019 |
| DbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modifications CT Lu, KY Huang, MG Su, TY Lee, NA Bretana, WC Chang, YJ Chen, ... Nucleic acids research 41 (D1), D295-D305, 2013 | 220 | 2013 |
| Global characterization of macrophage polarization mechanisms and identification of M2-type polarization inhibitors L He, JH Jhong, Q Chen, KY Huang, K Strittmatter, J Kreuzer, M DeRan, ... Cell reports 37 (5), 2021 | 177 | 2021 |
| dbPTM 2016: 10-year anniversary of a resource for post-translational modification of proteins KY Huang, MG Su, HJ Kao, YC Hsieh, JH Jhong, KH Cheng, HD Huang, ... Nucleic acids research 44 (D1), D435-D446, 2016 | 175 | 2016 |
| dbAMP: an integrated resource for exploring antimicrobial peptides with functional activities and physicochemical properties on transcriptome and proteome data JH Jhong, YH Chi, WC Li, TH Lin, KY Huang, TY Lee Nucleic acids research 47 (D1), D285-D297, 2019 | 139 | 2019 |
| An interpretable rule-based diagnostic classification of diabetic nephropathy among type 2 diabetes patients GM Huang, KY Huang, TY Lee, JTY Weng BMC bioinformatics 16, 1-10, 2015 | 98 | 2015 |
| Gene expression profiling identifies candidate biomarkers for active and latent tuberculosis SW Lee, LSH Wu, GM Huang, KY Huang, TY Lee, JTY Weng BMC bioinformatics 17, 27-39, 2016 | 82 | 2016 |
| Poly-γ-glutamic acid synthesis, gene regulation, phylogenetic relationships, and role in fermentation YH Hsueh, KY Huang, SC Kunene, TY Lee International journal of molecular sciences 18 (12), 2644, 2017 | 81 | 2017 |
| dbSNO 2.0: a resource for exploring structural environment, functional and disease association and regulatory network of protein S-nitrosylation YJ Chen, CT Lu, MG Su, KY Huang, WC Ching, HH Yang, YC Liao, ... Nucleic acids research 43 (D1), D503-D511, 2015 | 79 | 2015 |
| Incorporating deep learning and multi-omics autoencoding for analysis of lung adenocarcinoma prognostication TY Lee, KY Huang, CH Chuang, CY Lee, TH Chang Computational biology and chemistry 87, 107277, 2020 | 76 | 2020 |
| A new scheme for strain typing of methicillin-resistant Staphylococcus aureus on the basis of matrix-assisted laser desorption ionization time-of-flight mass … HY Wang, TY Lee, YJ Tseng, TP Liu, KY Huang, YT Chang, CH Chen, ... PloS one 13 (3), e0194289, 2018 | 68 | 2018 |
| Investigation and identification of functional post-translational modification sites associated with drug binding and protein-protein interactions MG Su, JTY Weng, JBK Hsu, KY Huang, YH Chi, TY Lee BMC systems biology 11, 69-80, 2017 | 66 | 2017 |
| RegPhos 2.0: an updated resource to explore protein kinase–substrate phosphorylation networks in mammals KY Huang, HY Wu, YJ Chen, CT Lu, MG Su, YC Hsieh, CM Tsai, KI Lin, ... Database 2014, bau034, 2014 | 63 | 2014 |
| A two-layered machine learning method to identify protein O-GlcNAcylation sites with O-GlcNAc transferase substrate motifs HJ Kao, CH Huang, NA Bretaña, CT Lu, KY Huang, SL Weng, TY Lee BMC bioinformatics 16, 1-11, 2015 | 56 | 2015 |
| The Caenorhabditis elegans ekl (Enhancer of ksr-1 Lethality) Genes Include Putative Components of a Germline Small RNA Pathway CE Rocheleau, K Cullison, K Huang, Y Bernstein, AC Spilker, ... Genetics 178 (3), 1431-1443, 2008 | 55 | 2008 |
| Identifying protein phosphorylation sites with kinase substrate specificity on human viruses NA Bretaña, CT Lu, CY Chiang, MG Su, KY Huang, TY Lee, SL Weng PloS one 7 (7), e40694, 2012 | 49 | 2012 |
| Investigation and identification of protein carbonylation sites based on position-specific amino acid composition and physicochemical features SL Weng, KY Huang, FJ Kaunang, CH Huang, HJ Kao, TH Chang, ... BMC bioinformatics 18, 125-141, 2017 | 47 | 2017 |
| UbiNet 2.0: a verified, classified, annotated and updated database of E3 ubiquitin ligase–substrate interactions Z Li, S Chen, JH Jhong, Y Pang, KY Huang, S Li, TY Lee Database 2021, baab010, 2021 | 45 | 2021 |
| Identification of subtypes of anticancer peptides based on sequential features and physicochemical properties KY Huang, YJ Tseng, HJ Kao, CH Chen, HH Yang, SL Weng Scientific reports 11 (1), 13594, 2021 | 44 | 2021 |