| Evaluation of some aspects in supervised cell type identification for single-cell RNA-seq: classifier, feature selection, and reference construction W Ma, K Su, H Wu Genome biology 22, 1-23, 2021 | 44 | 2021 |
| Cellcano: supervised cell type identification for single cell ATAC-seq data W Ma, J Lu, H Wu Nature Communications 14 (1), 1864, 2023 | 24 | 2023 |
| A survey on knowledge graphs for healthcare: Resources, application progress, and promise H Cui, J Lu, S Wang, R Xu, W Ma, S Yu, Y Yu, X Kan, T Fu, C Ling, J Ho, ... ICML 3rd Workshop on Interpretable Machine Learning in Healthcare (IMLH), 2023 | 21* | 2023 |
| BARTweb: a web server for transcriptional regulator association analysis W Ma, Z Wang, Y Zhang, NE Magee, Y Feng, R Shi, Y Chen, C Zang NAR Genomics and Bioinformatics 3 (2), lqab022, 2021 | 17* | 2021 |
| Hiprompt: Few-shot biomedical knowledge fusion via hierarchy-oriented prompting J Lu, J Shen, B Xiong, W Ma, S Staab, C Yang Proceedings of the 46th International ACM SIGIR Conference on Research and …, 2023 | 14 | 2023 |
| LRcell: detecting the source of differential expression at the sub–cell-type level from bulk RNA-seq data W Ma, S Sharma, P Jin, SL Gourley, ZS Qin Briefings in Bioinformatics 23 (3), bbac063, 2022 | 9 | 2022 |
| Cell type-specific DNA methylome signatures reveal epigenetic mechanisms for neuronal diversity and neurodevelopmental disorder Y Jin, K Su, HE Kong, W Ma, Z Wang, Y Li, R Li, EG Allen, H Wu, P Jin Human Molecular Genetics 32 (2), 218-230, 2023 | 7 | 2023 |
| Intrinsic bias estimation for improved analysis of bulk and single-cell chromatin accessibility profiles using SELMA SS Hu, L Liu, Q Li, W Ma, MJ Guertin, CA Meyer, K Deng, T Zhang, ... Nature Communications 13 (1), 5533, 2022 | 6* | 2022 |
| Uncertainty-aware pre-trained foundation models for patient risk prediction via gaussian process J Lu, S Zhao, W Ma, H Shao, X Hu, Y Xi, C Yang Companion Proceedings of the ACM Web Conference 2024, 1162-1165, 2024 | 4 | 2024 |
| A review on knowledge graphs for healthcare: Resources, applications, and promises C Yang, H Cui, J Lu, S Wang, R Xu, W Ma, Y Yu, S Yu, X Kan, C Ling, ... arXiv preprint arXiv:2306.04802, 2023 | 3 | 2023 |
| Dysregulation of Prefrontal Oligodendrocyte Lineage Cells Across Mouse Models of Adversity and Human Major Depressive Disorder Oligodendrocyte dysregulation in mouse models of … S Sharma, W Ma, KJ Ressler, T Anderson, DC Li, P Jin, SL Gourley, Z Qin bioRxiv, 2023 | 3 | 2023 |
| Whole-genome bisulfite sequencing of cell-free DNA unveils age-dependent and ALS-associated methylation alterations Y Jin, KN Conneely, W Ma, RK Naviaux, T Siddique, EG Allen, ... Cell & Bioscience 15 (1), 26, 2025 | | 2025 |
| FastCCC: A permutation-free framework for scalable, robust, and reference-based cell-cell communication analysis in single cell transcriptomics studies S Hou, W Ma, X Zhou bioRxiv, 2025.01. 27.635115, 2025 | | 2025 |
| Target-oriented Reference Construction for supervised cell type identification in scRNA-seq X Wei, W Ma, Z Wu, H Wu 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2024 | | 2024 |
| cypress: an R/Bioconductor package for cell-type-specific differential expression analysis power assessment S Yu, G Meng, W Tang, W Ma, R Wang, X Zhu, X Sun, H Feng Bioinformatics 40 (8), btae511, 2024 | | 2024 |
| Approaches to Marker Gene Identification from Single-Cell RNA-Sequencing Data RY Li, W Ma, ZS Qin Handbook of Statistical Bioinformatics, 71-84, 2022 | | 2022 |
Jiaying LuResearch Assistant Professor of School of Nursing's Center for Data Science, at Emory UniversityVerified email at emory.edu
