| Folding non-homologous proteins by coupling deep-learning contact maps with I-TASSER assembly simulations W Zheng, C Zhang, Y Li, R Pearce, EW Bell, Y Zhang Cell reports methods 1 (3), 2021 | 486 | 2021 |
| Protein structure and sequence reanalysis of 2019-nCoV genome refutes snakes as its intermediate host and the unique similarity between its spike protein insertions and HIV-1 C Zhang, W Zheng, X Huang, EW Bell, X Zhou, Y Zhang Journal of proteome research 19 (4), 1351-1360, 2020 | 369 | 2020 |
| DockRMSD: an open-source tool for atom mapping and RMSD calculation of symmetric molecules through graph isomorphism EW Bell, Y Zhang Journal of cheminformatics 11, 1-9, 2019 | 335 | 2019 |
| I-TASSER-MTD: a deep-learning-based platform for multi-domain protein structure and function prediction X Zhou, W Zheng, Y Li, R Pearce, C Zhang, EW Bell, G Zhang, Y Zhang Nature Protocols 17 (10), 2326-2353, 2022 | 308 | 2022 |
| I-TASSER gateway: A protein structure and function prediction server powered by XSEDE W Zheng, C Zhang, EW Bell, Y Zhang Future Generation Computer Systems 99, 73-85, 2019 | 122 | 2019 |
| Ensembling multiple raw coevolutionary features with deep residual neural networks for contact‐map prediction in CASP13 Y Li, C Zhang, EW Bell, DJ Yu, Y Zhang Proteins: Structure, Function, and Bioinformatics 87 (12), 1082-1091, 2019 | 106 | 2019 |
| Deducing high-accuracy protein contact-maps from a triplet of coevolutionary matrices through deep residual convolutional networks Y Li, C Zhang, EW Bell, W Zheng, X Zhou, DJ Yu, Y Zhang PLoS computational biology 17 (3), e1008865, 2021 | 90 | 2021 |
| EDock: blind protein–ligand docking by replica-exchange monte carlo simulation W Zhang, EW Bell, M Yin, Y Zhang Journal of cheminformatics 12, 1-17, 2020 | 85 | 2020 |
| Protein structure prediction using deep learning distance and hydrogen‐bonding restraints in CASP14 W Zheng, Y Li, C Zhang, X Zhou, R Pearce, EW Bell, X Huang, Y Zhang Proteins: Structure, Function, and Bioinformatics 89 (12), 1734-1751, 2021 | 60 | 2021 |
| PEPPI: whole-proteome protein-protein interaction prediction through structure and sequence similarity, functional association, and machine learning EW Bell, JH Schwartz, PL Freddolino, Y Zhang Journal of molecular biology 434 (11), 167530, 2022 | 48 | 2022 |
| Protein inter‐residue contact and distance prediction by coupling complementary coevolution features with deep residual networks in CASP14 Y Li, C Zhang, W Zheng, X Zhou, EW Bell, DJ Yu, Y Zhang Proteins: Structure, Function, and Bioinformatics 89 (12), 1911-1921, 2021 | 22 | 2021 |
| Identification of inhibitors of the E. coli chaperone SurA using in silico and in vitro techniques EW Bell, EJ Zheng, LM Ryno Bioorganic & Medicinal Chemistry Letters 28 (22), 3540-3548, 2018 | 11 | 2018 |
| Recombinant Penicillium oxalicum 16 β-Glucosidase 1 Displays Comprehensive Inhibitory Resistance to Several Lignocellulose Pretreatment Products, Ethanol … H Li, S Yi, EW Bell, Q Huang, X Zhao Applied biochemistry and biotechnology 191, 772-784, 2020 | 8 | 2020 |
| Protein Structure and Sequence Reanalysis of 2019-nCoV Genome Refutes Snakes as Its Intermediate Host and the Unique Similarity between Its Spike Protein Insertions and HIV-1. Z Chengxin, Z Wei, H Xiaoqiang, W Bell Eric, Z Xiaogen, Z Yang https://pubs. acs. org/doi/pdf/10.1021/acs. jproteome. 0c00129, 2020 | 4 | 2020 |
| Zhang YJJopr. Protein structure and sequence re-analysis of 2019-nCoV genome refutes snakes as its intermediate host or the unique similarity between its spike protein … C Zhang, W Zheng, X Huang, EW Bell, X Zhou J Proteome Res 19 (4), 1351-1360, 2020 | 4 | 2020 |
| Virtual screening and bioactivity modeling for G protein‐coupled receptors W Chan, J Wu, E Bell, Y Zhang GPCRs as Therapeutic Targets 1, 388-423, 2022 | 1 | 2022 |
| High throughput structure-guided functional annotation of microbial proteomes PL Freddolino, E Bell, J Schwartz, M Yadavalli, C Barnier Biophysical Journal 122 (3), 311a-312a, 2023 | | 2023 |
| Exploring inhibitors of the periplasmic chaperone SurA using fluorescence anisotropy EJ Zheng, EW Bell, LM Ryno The FASEB Journal 31, 939.4-939.4, 2017 | | 2017 |
| Investigation of Small Molecules as Periplasmic Chaperone Inhibitors Using In Silico and In VivoMethods E Bell | | 2016 |
| Insights into the Binding Behavior of Chaperone SurA Using In Silico Methods E Bell | | 2015 |
Chengxin ZhangUniversity of MichiganVerified email at umich.edu
