| PhysiCell: An open source physics-based cell simulator for 3-D multicellular systems A Ghaffarizadeh, R Heiland, SH Friedman, SM Mumenthaler, P Macklin PLoS computational biology 14 (2), e1005991, 2018 | 437 | 2018 |
| A review of cell-based computational modeling in cancer biology J Metzcar, Y Wang, R Heiland, P Macklin JCO clinical cancer informatics 2, 1-13, 2019 | 405 | 2019 |
| Extending transfer entropy improves identification of effective connectivity in a spiking cortical network model S Ito, ME Hansen, R Heiland, A Lumsdaine, AM Litke, JM Beggs PloS one 6 (11), e27431, 2011 | 285 | 2011 |
| PhysiBoSS: a multi-scale agent-based modelling framework integrating physical dimension and cell signalling G Letort, A Montagud, G Stoll, R Heiland, E Barillot, P Macklin, A Zinovyev, ... Bioinformatics 35 (7), 1188-1196, 2019 | 123 | 2019 |
| Multicell simulations of development and disease using the CompuCell3D simulation environment MH Swat, SD Hester, AI Balter, RW Heiland, BL Zaitlen, JA Glazier Systems Biology, 361-428, 2009 | 79 | 2009 |
| High-throughput cancer hypothesis testing with an integrated PhysiCell-EMEWS workflow J Ozik, N Collier, JM Wozniak, C Macal, C Cockrell, SH Friedman, ... BMC bioinformatics 19, 81-97, 2018 | 76 | 2018 |
| Learning-accelerated discovery of immune-tumour interactions J Ozik, N Collier, R Heiland, G An, P Macklin Molecular systems design & engineering 4 (4), 747-760, 2019 | 61 | 2019 |
| Iterative community-driven development of a SARS-CoV-2 tissue simulator M Getz, Y Wang, G An, M Asthana, A Becker, C Cockrell, N Collier, ... BioRxiv, 2020.04. 02.019075, 2021 | 57 | 2021 |
| Web service infrastructure for chemoinformatics X Dong, KE Gilbert, R Guha, R Heiland, J Kim, ME Pierce, GC Fox, ... Journal of chemical information and modeling 47 (4), 1303-1307, 2007 | 57 | 2007 |
| MutDB services: interactive structural analysis of mutation data J Dantzer, C Moad, R Heiland, S Mooney Nucleic acids research 33 (suppl_2), W311-W314, 2005 | 55 | 2005 |
| MutDB: update on development of tools for the biochemical analysis of genetic variation A Singh, A Olowoyeye, PH Baenziger, J Dantzer, MG Kann, P Radivojac, ... Nucleic acids research 36 (suppl_1), D815-D819, 2007 | 53 | 2007 |
| Visual methods for interpreting optical nonlinearity at the molecular level RD Wampler, AJ Moad, CW Moad, R Heiland, GJ Simpson Accounts of chemical research 40 (10), 953-960, 2007 | 48 | 2007 |
| Phase-space analysis of bursting behavior in Kolmogorov flow D Armbruster, R Heiland, EJ Kostelich, B Nicolaenko Physica D: Nonlinear Phenomena 58 (1-4), 392-401, 1992 | 43 | 1992 |
| NLOPredict: Visualization and data analysis software for nonlinear optics AJ Moad, CW Moad, JM Perry, RD Wampler, GS Goeken, NJ Begue, ... Journal of computational chemistry 28 (12), 1996-2002, 2007 | 41 | 2007 |
| Animated rotations using quaternions and splines on a 4D sphere GM Nielson, RW Heiland Programming and Computer Software 18 (4), 145-154, 1992 | 39 | 1992 |
| The Cell Behavior Ontology: Describing the intrinsic biological behaviors of real and model cells seen as active agents JP Sluka, A Shirinifard, M Swat, A Cosmanescu, RW Heiland, JA Glazier Bioinformatics, 2014 | 38 | 2014 |
| k l t o o l: A tool to analyze spatiotemporal complexity D Armbruster, R Heiland, EJ Kostelich Chaos: An Interdisciplinary Journal of Nonlinear Science 4 (2), 421-424, 1994 | 37 | 1994 |
| xml2jupyter: Mapping parameters between XML and Jupyter widgets R Heiland, D Mishler, T Zhang, E Bower, P Macklin Journal of open source software 4 (39), 10.21105/joss. 01408, 2019 | 23 | 2019 |
| Identification of similar regions of protein structures using integrated sequence and structure analysis tools B Peters, C Moad, E Youn, K Buffington, R Heiland, S Mooney BMC structural biology 6, 1-8, 2006 | 23 | 2006 |
| A survey of co-processing systems R Heiland, MP Baker CEWES MSRC PET Technical Report, 98-52, 1998 | 16 | 1998 |
Paul MacklinAssociate Dean for Undergraduate Education - Luddy School - Indiana UniversityVerified email at MathCancer.org
