Articles with public access mandates - Simon AndersLearn more
Available somewhere: 70
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
MI Love, W Huber, S Anders
Genome biology 15, 1-21, 2014
Mandates: US National Institutes of Health
Orchestrating high-throughput genomic analysis with Bioconductor
W Huber, VJ Carey, R Gentleman, S Anders, M Carlson, BS Carvalho, ...
Nature methods 12 (2), 115-121, 2015
Mandates: US National Institutes of Health
Count-based differential expression analysis of RNA sequencing data using R and Bioconductor
S Anders, DJ McCarthy, Y Chen, M Okoniewski, GK Smyth, W Huber, ...
Nature protocols 8 (9), 1765-1786, 2013
Mandates: Swiss National Science Foundation, National Health and Medical Research …
Accounting for technical noise in single-cell RNA-seq experiments
P Brennecke, S Anders, JK Kim, AA Kołodziejczyk, X Zhang, V Proserpio, ...
Nature methods 10 (11), 1093-1095, 2013
Mandates: Australian Research Council, UK Biotechnology and Biological Sciences …
A colorimetric RT-LAMP assay and LAMP-sequencing for detecting SARS-CoV-2 RNA in clinical samples
VL Dao Thi, K Herbst, K Boerner, M Meurer, LPM Kremer, D Kirrmaier, ...
Science translational medicine 12 (556), eabc7075, 2020
Mandates: German Research Foundation, Helmholtz Association
Gene expression across mammalian organ development
M Cardoso-Moreira, J Halbert, D Valloton, B Velten, C Chen, Y Shao, ...
Nature 571 (7766), 505-509, 2019
Mandates: Swiss National Science Foundation, US National Institutes of Health …
ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data
M Morgan, S Anders, M Lawrence, P Aboyoun, H Pagès, R Gentleman
Bioinformatics 25 (19), 2607-2608, 2009
Mandates: US National Institutes of Health
Analysing high-throughput sequencing data in Python with HTSeq 2.0
GH Putri, S Anders, PT Pyl, JE Pimanda, F Zanini
Bioinformatics 38 (10), 2943-2945, 2022
Mandates: National Health and Medical Research Council, Australia, European Molecular …
Direct competition between hnRNP C and U2AF65 protects the transcriptome from the exonization of Alu elements
K Zarnack, J König, M Tajnik, I Martincorena, S Eustermann, I Stévant, ...
Cell 152 (3), 453-466, 2013
Mandates: Cancer Research UK
RNA-Seq workflow: gene-level exploratory analysis and differential expression
MI Love, S Anders, V Kim, W Huber
F1000Research 4, 2015
Mandates: US National Institutes of Health
Quiescence modulates stem cell maintenance and regenerative capacity in the aging brain
G Kalamakis, D Brüne, S Ravichandran, J Bolz, W Fan, F Ziebell, T Stiehl, ...
Cell 176 (6), 1407-1419. e14, 2019
Mandates: German Research Foundation, Helmholtz Association, UK Medical Research Council
Fast simulation of stabilizer circuits using a graph-state representation
S Anders, HJ Briegel
Physical Review A—Atomic, Molecular, and Optical Physics 73 (2), 022334, 2006
Mandates: German Research Foundation
DEqMS: a method for accurate variance estimation in differential protein expression analysis
Y Zhu, LM Orre, YZ Tran, G Mermelekas, HJ Johansson, A Malyutina, ...
Molecular & Cellular Proteomics 19 (6), 1047-1057, 2020
Mandates: German Research Foundation, Swedish Research Council
Genome-wide analysis of mRNA decay patterns during early Drosophiladevelopment
S Thomsen, S Anders, SC Janga, W Huber, CR Alonso
Genome biology 11, 1-27, 2010
Mandates: German Research Foundation
Drug-perturbation-based stratification of blood cancer
S Dietrich, M Oleś, J Lu, L Sellner, S Anders, B Velten, B Wu, J Huellein, ...
The Journal of clinical investigation 128 (1), 427-445, 2018
Mandates: US National Institutes of Health, Helmholtz Association, Academy of Finland …
Transcriptome and translatome co-evolution in mammals
ZY Wang, E Leushkin, A Liechti, S Ovchinnikova, K Mößinger, T Brüning, ...
Nature 588 (7839), 642-647, 2020
Mandates: Swiss National Science Foundation, Australian Research Council, German …
Dissecting intratumour heterogeneity of nodal B-cell lymphomas at the transcriptional, genetic and drug-response levels
T Roider, J Seufert, A Uvarovskii, F Frauhammer, M Bordas, N Abedpour, ...
Nature cell biology 22 (7), 896-906, 2020
Mandates: German Research Foundation, Helmholtz Association, Federal Ministry of …
Relating CNVs to transcriptome data at fine resolution: assessment of the effect of variant size, type, and overlap with functional regions
A Schlattl, S Anders, SM Waszak, W Huber, JO Korbel
Genome research 21 (12), 2004-2013, 2011
Mandates: German Research Foundation
Endothelial GATA4 controls liver fibrosis and regeneration by preventing a pathogenic switch in angiocrine signaling
M Winkler, T Staniczek, SW Kürschner, CD Schmid, H Schönhaber, ...
Journal of hepatology 74 (2), 380-393, 2021
Mandates: German Research Foundation
SARS-CoV-2 RNA extraction using magnetic beads for rapid large-scale testing by RT-qPCR and RT-LAMP
S Klein, TG Müller, D Khalid, V Sonntag-Buck, AM Heuser, B Glass, ...
Viruses 12 (8), 863, 2020
Mandates: German Research Foundation, Federal Ministry of Education and Research, Germany
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