Stanislaw Dunin-Horkawicz

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Janusz BujnickiProfessor of Biology, International Institute of Molecular and Cell Biology in WarsawVerified email at iimcb.gov.pl
Andrei LupasDirector of the Department of Protein Evolution, Max-Planck-Institute for BiologyVerified email at tuebingen.mpg.de
Jan LudwiczakPrescient Design, Genentech, RocheVerified email at roche.com
Magdalena MachnickaInstitute of Informatics, University of WarsawVerified email at mimuw.edu.pl
Krzysztof SzczepaniakInternational Institute of Molecular and Cell Biology in WarsawVerified email at uj.edu.pl
Marcus HartmannMax Planck Institute for Biology TübingenVerified email at tuebingen.mpg.de
Kornelius ZethRoskilde University, Department of Science and EnvironmentVerified email at ruc.dk
Vikram AlvaGroup Leader, Max Planck Institute for BiologyVerified email at tuebingen.mpg.de
Katarzyna H. KaminskaCybersecurity Division | Warsaw University of TechnologyVerified email at pw.edu.pl
Birte Hernandez AlvarezMax Planck Institue for Biology, Dept. Protein EvolutionVerified email at tuebingen.mpg.de
ANNA CZERWONIECBioinformatics Laboratory, IMBB, Adam Mickiewicz University; VitaInSilica Sp. z o.o.Verified email at amu.edu.pl
Kaja Milanowska-ZabelArdigenVerified email at ardigen.com
Witold JanuszewskiComputational Transcriptomics Group, Institute of Biology III, Albert Ludwig University of FreiburgVerified email at biologie.uni-freiburg.de
Mark HelmPharmaceutical ChemistryVerified email at uni-mainz.de
Rafal MadajUniversity of WarsawVerified email at uw.edu.pl
Joachim SchultzProf. Pharmaceutical ChemistryVerified email at uni-tuebingen.de
Karolina L. TkaczukAstraZenecaVerified email at astrazeneca.com
Marcin MagnusComputational RNA biologist at Molecular and Cell Biology, Harvard UniversityVerified email at fas.harvard.edu
Michał BonieckiInternational Institute of Molecular and Cell Biology in WarsawVerified email at genesilico.pl
Anna MuszewskaInstitute of Biochemistry and Biophysics Polish Academy of SciencesVerified email at ibb.waw.pl

Stanislaw Dunin-Horkawicz

University of Warsaw, Institute of Evolutionary Biology

Verified email at uw.edu.pl - Homepage

coiled coils protein evolution comparative genomics structural biology


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MODOMICS: a database of RNA modification pathways—2013 update MA Machnicka, K Milanowska, O Osman Oglou, E Purta, M Kurkowska, ... Nucleic acids research 41 (D1), D262-D267, 2012	1127	2012
MODOMICS: a database of RNA modification pathways S Dunin-Horkawicz, A Czerwoniec, MJ Gajda, M Feder, H Grosjean, ... Nucleic acids research 34 (suppl_1), D145-D149, 2006	305	2006
MODOMICS: a database of RNA modification pathways. 2008 update A Czerwoniec, S Dunin-Horkawicz, E Purta, KH Kaminska, JM Kasprzak, ... Nucleic acids research 37 (suppl_1), D118-D121, 2009	254	2009
Structural and evolutionary bioinformatics of the SPOUT superfamily of methyltransferases KL Tkaczuk, S Dunin-Horkawicz, E Purta, JM Bujnicki BMC bioinformatics 8, 1-31, 2007	203	2007
RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme Z Miao, RW Adamiak, M Antczak, RT Batey, AJ Becka, M Biesiada, ... Rna 23 (5), 655-672, 2017	200	2017
RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures Z Miao, RW Adamiak, MF Blanchet, M Boniecki, JM Bujnicki, SJ Chen, ... Rna 21 (6), 1066-1084, 2015	197	2015
The RNase H-like superfamily: new members, comparative structural analysis and evolutionary classification KA Majorek, S Dunin-Horkawicz, K Steczkiewicz, A Muszewska, ... Nucleic acids research 42 (7), 4160-4179, 2014	178	2014
DeepCoil—a fast and accurate prediction of coiled-coil domains in protein sequences J Ludwiczak, A Winski, K Szczepaniak, V Alva, S Dunin-Horkawicz Bioinformatics 35 (16), 2790-2795, 2019	171	2019
Rational design of helical nanotubes from self-assembly of coiled-coil lock washers C Xu, R Liu, AK Mehta, RC Guerrero-Ferreira, ER Wright, ... Journal of the American Chemical Society 135 (41), 15565-15578, 2013	136	2013
Phylogenomic analysis of the GIY-YIG nuclease superfamily S Dunin-Horkawicz, M Feder, JM Bujnicki BMC genomics 7, 1-19, 2006	135	2006
The mechanisms of HAMP-mediated signaling in transmembrane receptors HU Ferris, S Dunin-Horkawicz, LG Mondéjar, M Hulko, K Hantke, J Martin, ... Structure 19 (3), 378-385, 2011	118	2011
The structure and topology of α-helical coiled coils AN Lupas, J Bassler, S Dunin-Horkawicz Fibrous Proteins: Structures and Mechanisms, 95-129, 2017	117	2017
Mechanism of regulation of receptor histidine kinases HU Ferris, S Dunin-Horkawicz, N Hornig, M Hulko, J Martin, JE Schultz, ... Structure 20 (1), 56-66, 2012	117	2012
Comprehensive analysis of HAMP domains: implications for transmembrane signal transduction S Dunin-Horkawicz, AN Lupas Journal of molecular biology 397 (5), 1156-1174, 2010	106	2010
A coiled-coil motif that sequesters ions to the hydrophobic core MD Hartmann, O Ridderbusch, K Zeth, R Albrecht, O Testa, DN Woolfson, ... Proceedings of the National Academy of Sciences 106 (40), 16950-16955, 2009	94	2009
The yfhQ gene of Escherichia coli encodes a tRNA:Cm32/Um32 methyltransferase E Purta, F Van Vliet, KL Tkaczuk, S Dunin-Horkawicz, H Mori, ... BMC molecular biology 7, 1-13, 2006	66	2006
Complete fiber structures of complex trimeric autotransporter adhesins conserved in enterobacteria MD Hartmann, I Grin, S Dunin-Horkawicz, S Deiss, D Linke, AN Lupas, ... Proceedings of the National Academy of Sciences 109 (51), 20907-20912, 2012	63	2012
Axial helix rotation as a mechanism for signal regulation inferred from the crystallographic analysis of the E. coli serine chemoreceptor HU Ferris, K Zeth, M Hulko, S Dunin-Horkawicz, AN Lupas Journal of structural biology 186 (3), 349-356, 2014	62	2014
Novel highly thermostable endolysin from Thermus scotoductus MAT2119 bacteriophage Ph2119 with amino acid sequence similarity to eukaryotic peptidoglycan recognition proteins M Plotka, AK Kaczorowska, A Stefanska, A Morzywolek, OH Fridjonsson, ... Applied and Environmental Microbiology 80 (3), 886-895, 2014	51	2014
Computational modeling of RNA 3D structures, with the aid of experimental restraints M Magnus, D Matelska, G Łach, G Chojnowski, MJ Boniecki, E Purta, ... RNA biology 11 (5), 522-536, 2014	48	2014

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