| Bioconda: sustainable and comprehensive software distribution for the life sciences B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ... Nature methods 15 (7), 475-476, 2018 | 1218 | 2018 |
| LARP1 functions as a molecular switch for mTORC1-mediated translation of an essential class of mRNAs S Hong, MA Freeberg, T Han, A Kamath, Y Yao, T Fukuda, T Suzuki, ... Elife 6, e25237, 2017 | 226 | 2017 |
| Community-driven data analysis training for biology B Batut, S Hiltemann, A Bagnacani, D Baker, V Bhardwaj, C Blank, ... Cell systems 6 (6), 752-758. e1, 2018 | 209 | 2018 |
| GA4GH: International policies and standards for data sharing across genomic research and healthcare HL Rehm, AJH Page, L Smith, JB Adams, G Alterovitz, LJ Babb, ... Cell genomics 1 (2), 2021 | 189 | 2021 |
| Glycolytic enzymes coalesce in G bodies under hypoxic stress M Jin, GG Fuller, T Han, Y Yao, AF Alessi, MA Freeberg, NP Roach, ... Cell reports 20 (4), 895-908, 2017 | 178 | 2017 |
| The Caenorhabditis elegans HEN1 Ortholog, HENN-1, Methylates and Stabilizes Select Subclasses of Germline Small RNAs AC Billi, AF Alessi, V Khivansara, T Han, M Freeberg, S Mitani, JK Kim PLoS genetics 8 (4), e1002617, 2012 | 137 | 2012 |
| Transcriptional regulation by Pho23 modulates the frequency of autophagosome formation M Jin, D He, SK Backues, MA Freeberg, X Liu, JK Kim, DJ Klionsky Current Biology 24 (12), 1314-1322, 2014 | 116 | 2014 |
| Pervasive and dynamic protein binding sites of the mRNA transcriptome in Saccharomyces cerevisiae MA Freeberg, T Han, JJ Moresco, A Kong, YC Yang, ZJ Lu, JR Yates, ... Genome biology 14, 1-20, 2013 | 116 | 2013 |
| The European genome-phenome archive in 2021 MA Freeberg, LA Fromont, T D’Altri, AF Romero, JI Ciges, A Jene, G Kerry, ... Nucleic Acids Research 50 (D1), D980-D987, 2022 | 111 | 2022 |
| RNA promotes phase separation of glycolysis enzymes into yeast G bodies in hypoxia GG Fuller, T Han, MA Freeberg, JJ Moresco, A Ghanbari Niaki, NP Roach, ... Elife 9, e48480, 2020 | 93 | 2020 |
| A Conserved Upstream Motif Orchestrates Autonomous, Germline-Enriched Expression of Caenorhabditis elegans piRNAs AC Billi, MA Freeberg, AM Day, SY Chun, V Khivansara, JK Kim PLoS genetics 9 (3), e1003392, 2013 | 67 | 2013 |
| MORC-1 integrates nuclear RNAi and transgenerational chromatin architecture to promote germline immortality NE Weiser, DX Yang, S Feng, N Kalinava, KC Brown, J Khanikar, ... Developmental cell 41 (4), 408-423. e7, 2017 | 66 | 2017 |
| The Data Use Ontology to streamline responsible access to human biomedical datasets J Lawson, MN Cabili, G Kerry, T Boughtwood, A Thorogood, P Alper, ... Cell Genomics 1 (2), 2021 | 57 | 2021 |
| A Novel Long Non-Coding RNA in the hTERT Promoter Region Regulates hTERT Expression S Malhotra, MA Freeberg, SJ Winans, J Taylor, KL Beemon Non-coding RNA 4 (1), 1, 2017 | 33 | 2017 |
| Guidelines for reporting single-cell RNA-seq experiments A Füllgrabe, N George, M Green, P Nejad, B Aronow, SK Fexova, ... Nature biotechnology 38 (12), 1384-1386, 2020 | 32 | 2020 |
| EMBL’s European bioinformatics Institute (EMBL-EBI) in 2022 M Thakur, A Bateman, C Brooksbank, M Freeberg, M Harrison, M Hartley, ... Nucleic Acids Research 51 (D1), D9-D17, 2023 | 31 | 2023 |
| Casein kinase II promotes target silencing by miRISC through direct phosphorylation of the DEAD-box RNA helicase CGH-1 AF Alessi, V Khivansara, T Han, MA Freeberg, JJ Moresco, PG Tu, ... Proceedings of the National Academy of Sciences 112 (52), E7213-E7222, 2015 | 28 | 2015 |
| Galaxy Training Network, Taylor J, Backofen R, Nekrutenko A, Grüning B B Batut, S Hiltemann, A Bagnacani, D Baker, V Bhardwaj, C Blank, ... Community-driven data analysis training for biology. Cell Syst 6 (6), 752-758, 2018 | 16 | 2018 |
| A Solve-RD ClinVar-based reanalysis of 1522 index cases from ERN-ITHACA reveals common pitfalls and misinterpretations in exome sequencing AS Denommé-Pichon, L Matalonga, E de Boer, A Jackson, E Benetti, ... Genetics in Medicine 25 (4), 100018, 2023 | 11 | 2023 |
| piRNAs and siRNAs collaborate in Caenorhabditis elegans genome defense AC Billi, MA Freeberg, JK Kim Genome biology 13, 1-3, 2012 | 9 | 2012 |