| Bioconda: sustainable and comprehensive software distribution for the life sciences B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ... Nature methods 15 (7), 475-476, 2018 | 1227 | 2018 |
| Clonal CD4+ T cells in the HIV-1 latent reservoir display a distinct gene profile upon reactivation LB Cohn, IT da Silva, R Valieris, AS Huang, JCC Lorenzi, YZ Cohen, ... Nature medicine 24 (5), 604-609, 2018 | 147 | 2018 |
| Human dendritic cells (DCs) are derived from distinct circulating precursors that are precommitted to become CD1c+ or CD141+ DCs G Breton, S Zheng, R Valieris, I Tojal da Silva, R Satija, MC Nussenzweig Journal of Experimental Medicine 213 (13), 2861-2870, 2016 | 132 | 2016 |
| signeR: an empirical Bayesian approach to mutational signature discovery RA Rosales, RD Drummond, R Valieris, E Dias-Neto, IT Da Silva Bioinformatics 33 (1), 8-16, 2017 | 123 | 2017 |
| Tojal da Silva I, Satija R, Nussenzweig MC. Human dendritic cells (DCs) are derived from distinct circulating precursors that are precommitted to become CD1c+ or CD141+ DCs G Breton, S Zheng, R Valieris J Exp Med 213 (13), 2861-70, 2016 | 84 | 2016 |
| A total transcriptome profiling method for plasma-derived extracellular vesicles: applications for liquid biopsies MG Amorim, R Valieris, RD Drummond, MP Pizzi, VM Freitas, ... Scientific reports 7 (1), 1-11, 2017 | 73 | 2017 |
| Deep learning predicts underlying features on pathology images with therapeutic relevance for breast and gastric cancer R Valieris, L Amaro, CABT Osório, AP Bueno, RA Rosales Mitrowsky, ... Cancers 12 (12), 3687, 2020 | 46 | 2020 |
| A mixture model for determining SARS-Cov-2 variant composition in pooled samples R Valieris, RD Drummond, A Defelicibus, E Dias-Neto, RA Rosales, ... Bioinformatics 38 (7), 1809-1815, 2022 | 44 | 2022 |
| Utility of trio-based exome sequencing in the elucidation of the genetic basis of isolated syndromic intellectual disability: illustrative cases TNR Carneiro, ACV Krepischi, SS Costa, I Tojal da Silva, ... The application of clinical genetics, 93-98, 2018 | 41 | 2018 |
| A genomic case study of desmoplastic small round cell tumor: comprehensive analysis reveals insights into potential therapeutic targets and development of a monitoring tool for … EN Ferreira, BDF Barros, JE De Souza, RV Almeida, GT Torrezan, ... Human Genomics 10, 1-13, 2016 | 35 | 2016 |
| APOBEC‐mediated DNA alterations: A possible new mechanism of carcinogenesis in EBV‐positive gastric cancer I Bobrovnitchaia, R Valieris, RD Drummond, JP Lima, HC Freitas, ... International journal of cancer 146 (1), 181-191, 2020 | 31 | 2020 |
| Complex landscape of germline variants in Brazilian patients with hereditary and early onset breast cancer GT Torrezan, FGSR de Almeida, MCP Figueiredo, BDDF Barros, ... Frontiers in genetics 9, 161, 2018 | 26 | 2018 |
| Identification of DNA mutations in gastric washes from gastric adenocarcinoma patients: Possible implications for liquid biopsies and patient follow‐up MP Pizzi, TF Bartelli, AG Pelosof, HC Freitas, MD Begnami, ... International journal of cancer 145 (4), 1090-1098, 2019 | 18 | 2019 |
| SurfaceomeDB: a cancer-orientated database for genes encoding cell surface proteins JES de Souza, PAF Galante, RVB de Almeida, JPC Cunha, DT Ohara, ... Cancer Immunity 12 (2), 2012 | 18 | 2012 |
| Insights into the somatic mutation burden of hepatoblastomas from Brazilian patients TFM Aguiar, MP Rivas, S Costa, M Maschietto, T Rodrigues, ... Frontiers in Oncology 10, 556, 2020 | 17 | 2020 |
| Family-based whole-exome sequencing identifies rare variants potentially related to cutaneous melanoma predisposition in Brazilian melanoma-prone families F Fidalgo, GT Torrezan, BCS Sá, BDF Barros, LF Moredo, R Valieris, ... PLoS One 17 (1), e0262419, 2022 | 13 | 2022 |
| S-score: a scoring system for the identification and prioritization of predicted cancer genes JES De Souza, AF Fonseca, R Valieris, DM Carraro, JYJ Wang, ... PLoS One 9 (4), e94147, 2014 | 12 | 2014 |
| Genomics and epidemiology for gastric adenocarcinomas (GE4GAC): a Brazilian initiative to study gastric cancer GE4GAC group, TF Bartelli, LL Senda de Abrantes, HC Freitas, ... Applied Cancer Research 39, 1-4, 2019 | 11 | 2019 |
| Influence of BRCA1 germline mutations in the somatic mutational burden of triple-negative breast cancer EN Ferreira, RC Brianese, RVB de Almeida, RD Drummond, JE de Souza, ... Translational oncology 12 (11), 1453-1460, 2019 | 8 | 2019 |
| miRNAs 144-3p, 34a-5p, and 206 are a useful signature for distinguishing uterine leiomyosarcoma from other smooth muscle tumors BN Schiavon, KC Carvalho, CM Coutinho-Camillo, G Baiocchi, R Valieris, ... Surgical and Experimental Pathology 2, 1-8, 2019 | 7 | 2019 |
