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Li Shen
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Integrative analysis of 111 reference human epigenomes
Roadmap Epigenomics Consortium Integrative analysis coordination Kundaje ...
Nature 518 (7539), 317-330, 2015
6392*2015
Deep learning to improve breast cancer detection on screening mammography
L Shen, LR Margolies, JH Rothstein, E Fluder, R McBride, W Sieh
Scientific reports 9 (1), 12495, 2019
11002019
Distinct epigenomic landscapes of pluripotent and lineage-committed human cells
RD Hawkins, GC Hon, LK Lee, QM Ngo, R Lister, M Pelizzola, LE Edsall, ...
Cell stem cell 6 (5), 479-491, 2010
10012010
ngs.plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases
L Shen, N Shao, X Liu, E Nestler
BMC genomics 15 (1), 284, 2014
8702014
Sex-specific transcriptional signatures in human depression
B Labonté, O Engmann, I Purushothaman, C Menard, J Wang, C Tan, ...
Nature medicine 23 (9), 1102-1111, 2017
6952017
Epigenetic regulation of brain region-specific microglia clearance activity
P Ayata, A Badimon, HJ Strasburger, MK Duff, SE Montgomery, YHE Loh, ...
Nature neuroscience 21 (8), 1049-1060, 2018
4302018
diffReps: detecting differential chromatin modification sites from ChIP-seq data with biological replicates
L Shen, NY Shao, X Liu, I Maze, J Feng, EJ Nestler
PloS one 8 (6), e65598, 2013
4132013
Histone serotonylation is a permissive modification that enhances TFIID binding to H3K4me3
LA Farrelly, RE Thompson, S Zhao, AE Lepack, Y Lyu, NV Bhanu, ...
Nature 567 (7749), 535-539, 2019
4122019
Evaluation of combined artificial intelligence and radiologist assessment to interpret screening mammograms
T Schaffter, DSM Buist, CI Lee, Y Nikulin, D Ribli, Y Guan, W Lotter, Z Jie, ...
JAMA network open 3 (3), e200265-e200265, 2020
3992020
Sex differences in nucleus accumbens transcriptome profiles associated with susceptibility versus resilience to subchronic variable stress
GE Hodes, ML Pfau, I Purushothaman, HF Ahn, SA Golden, DJ Christoffel, ...
Journal of Neuroscience 35 (50), 16362-16376, 2015
3982015
Early life stress confers lifelong stress susceptibility in mice via ventral tegmental area OTX2
CJ Peña, HG Kronman, DM Walker, HM Cates, RC Bagot, ...
Science 356 (6343), 1185-1188, 2017
3872017
Circuit-wide transcriptional profiling reveals brain region-specific gene networks regulating depression susceptibility
RC Bagot, HM Cates, I Purushothaman, ZS Lorsch, DM Walker, J Wang, ...
Neuron 90 (5), 969-983, 2016
3412016
Critical role of histone turnover in neuronal transcription and plasticity
I Maze, W Wenderski, KM Noh, RC Bagot, N Tzavaras, I Purushothaman, ...
Neuron 87 (1), 77-94, 2015
3292015
HDAC2 regulates atypical antipsychotic responses through the modulation of mGlu2 promoter activity
M Kurita, T Holloway, A García-Bea, A Kozlenkov, AK Friedman, ...
Nature Neuroscience 15 (9), 1245-1254, 2012
3002012
β-catenin mediates stress resilience through Dicer1/microRNA regulation
C Dias, J Feng, H Sun, NY Shao, MS Mazei-Robison, D Damez-Werno, ...
Nature 516 (7529), 51-55, 2014
2892014
ENL links histone acetylation to oncogenic gene expression in acute myeloid leukaemia
L Wan, H Wen, Y Li, J Lyu, Y Xi, T Hoshii, JK Joseph, X Wang, YHE Loh, ...
Nature 543 (7644), 265-269, 2017
2732017
Neurobiological Sequelae of Witnessing Stressful Events in Adult Mice
BL Warren, VF Vialou, SD Iñiguez, LF Alcantara, KN Wright, J Feng, ...
Biological Psychiatry, 2012
2472012
Locus-specific epigenetic remodeling controls addiction-and depression-related behaviors
EA Heller, HM Cates, CJ Peña, H Sun, N Shao, J Feng, SA Golden, ...
Nature neuroscience 17 (12), 1720-1727, 2014
2432014
GeneOverlap: Test and visualize gene overlaps
L Shen
Bioconductor package, 2013
239*2013
Cocaine dynamically regulates heterochromatin and repetitive element unsilencing in nucleus accumbens
I Maze, J Feng, MB Wilkinson, HS Sun, L Shen, EJ Nestler
Proceedings of the National Academy of Sciences 108 (7), 3035, 2011
2182011
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