| metaFlye: scalable long-read metagenome assembly using repeat graphs M Kolmogorov, DM Bickhart, B Behsaz, A Gurevich, M Rayko, SB Shin, ... Nature Methods 17 (11), 1103-1110, 2020 | 691 | 2020 |
| Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome DM Bickhart, BD Rosen, S Koren, BL Sayre, AR Hastie, S Chan, J Lee, ... Nature genetics 49 (4), 643-650, 2017 | 614 | 2017 |
| De novo assembly of the cattle reference genome with single-molecule sequencing BD Rosen, DM Bickhart, RD Schnabel, S Koren, CG Elsik, E Tseng, ... Gigascience 9 (3), giaa021, 2020 | 520 | 2020 |
| De novo assembly of haplotype-resolved genomes with trio binning S Koren, A Rhie, BP Walenz, AT Dilthey, DM Bickhart, SB Kingan, ... Nature biotechnology 36 (12), 1174-1182, 2018 | 463 | 2018 |
| Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography P Normand, P Lapierre, LS Tisa, JP Gogarten, N Alloisio, E Bagnarol, ... Genome research 17 (1), 7-15, 2007 | 434 | 2007 |
| Copy number variation of individual cattle genomes using next-generation sequencing DM Bickhart, Y Hou, SG Schroeder, C Alkan, MF Cardone, ... Genome research 22 (4), 778-790, 2012 | 357 | 2012 |
| Scaffolding of long read assemblies using long range contact information J Ghurye, M Pop, S Koren, D Bickhart, CS Chin BMC genomics 18, 1-11, 2017 | 261 | 2017 |
| An improved pig reference genome sequence to enable pig genetics and genomics research A Warr, N Affara, B Aken, H Beiki, DM Bickhart, K Billis, W Chow, L Eory, ... Gigascience 9 (6), giaa051, 2020 | 260 | 2020 |
| Genomic characteristics of cattle copy number variations Y Hou, GE Liu, DM Bickhart, MF Cardone, K Wang, E Kim, LK Matukumalli, ... BMC genomics 12, 1-11, 2011 | 254 | 2011 |
| On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales O Zhaxybayeva, KS Swithers, P Lapierre, GP Fournier, DM Bickhart, ... Proceedings of the National Academy of Sciences 106 (14), 5865-5870, 2009 | 244 | 2009 |
| Cattle sex-specific recombination and genetic control from a large pedigree analysis L Ma, JR O'Connell, PM VanRaden, B Shen, A Padhi, C Sun, DM Bickhart, ... PLoS genetics 11 (11), e1005387, 2015 | 209 | 2015 |
| Genomic signatures reveal new evidences for selection of important traits in domestic cattle L Xu, DM Bickhart, JB Cole, SG Schroeder, J Song, CPV Tassell, ... Molecular biology and evolution 32 (3), 711-725, 2015 | 173 | 2015 |
| Genome to phenome: improving animal health, production, and well-being–a new USDA blueprint for animal genome research 2018–2027 C Rexroad, J Vallet, LK Matukumalli, J Reecy, D Bickhart, H Blackburn, ... Frontiers in genetics 10, 327, 2019 | 170 | 2019 |
| Selecting sequence variants to improve genomic predictions for dairy cattle PM VanRaden, ME Tooker, JR O’connell, JB Cole, DM Bickhart Genetics Selection Evolution 49, 1-12, 2017 | 165 | 2017 |
| Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities DM Bickhart, M Kolmogorov, E Tseng, DM Portik, A Korobeynikov, ... Nature biotechnology 40 (5), 711-719, 2022 | 156 | 2022 |
| Genomic divergence of zebu and taurine cattle identified through high-density SNP genotyping LR Porto-Neto, TS Sonstegard, GE Liu, DM Bickhart, MVB Da Silva, ... BMC genomics 14, 1-12, 2013 | 154 | 2013 |
| Chromosome-level assembly of the water buffalo genome surpasses human and goat genomes in sequence contiguity WY Low, R Tearle, DM Bickhart, BD Rosen, SB Kingan, T Swale, ... Nature communications 10 (1), 260, 2019 | 148 | 2019 |
| The challenges and importance of structural variation detection in livestock DM Bickhart, GE Liu Frontiers in genetics 5, 37, 2014 | 146 | 2014 |
| Identification of a nonsense mutation in CWC15 associated with decreased reproductive efficiency in Jersey cattle TS Sonstegard, JB Cole, PM VanRaden, CP Van Tassell, DJ Null, ... PloS one 8 (1), e54872, 2013 | 135 | 2013 |
| Genomic regions showing copy number variations associate with resistance or susceptibility to gastrointestinal nematodes in Angus cattle Y Hou, GE Liu, DM Bickhart, LK Matukumalli, C Li, J Song, LC Gasbarre, ... Functional & integrative genomics 12, 81-92, 2012 | 126 | 2012 |
Timothy P. SmithUSDA/ARS U.S. Meat Animal Research CenterVerified email at ars.usda.gov
