Rui Alves

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Albert SorribasUniversity of LleidaVerified email at cmb.udl.cat
Ester VilaprinyoSystems Biology and Statistical Methods for Biomedical Research; University of Lleida - IRBLleidaVerified email at cmb.udl.cat
Francesc Solsona TehasUniversitat de Lleida (UdL)Verified email at udl.cat
Hiren KarathiaBioinformatics Manager; NCATS, NIHVerified email at nih.gov
Michael A. SavageauDistinguished Professor, UC DavisVerified email at ucdavis.edu
Armindo SalvadorCenter for Neuroscience and Cell Biology - The University of CoimbraVerified email at cnc.uc.pt
Jordi VilaplanaLecturer, University of LleidaVerified email at udl.cat
Ivan TeixidóUniversitat de LleidaVerified email at udl.cat
Gonzalo Guillén GosálbezProfessor in Chemical Systems Engineering, ETH ZurichVerified email at urv.cat
Alberto Marin-SanguinoUniversitat de LleidaVerified email at udl.cat
Ron MiloProfessor, Weizmann Institute of ScienceVerified email at weizmann.ac.il
Fernando AntunesFull professor - Faculdade de Ciências da Universidade de LisboaVerified email at fc.ul.pt
Jordi Mateo FornesLecturer, University of LleidaVerified email at udl.cat
Carlos PozoLecturer, Universitat Rovira i Virgili (URV)Verified email at urv.cat
David F. SavageProfessor of Molecular & Cell Biology, UC Berkeley; Investigator, Howard Hughes Medical InstituteVerified email at berkeley.edu
Dan DavidiResearch Initiative LeaderVerified email at hms.harvard.edu
Avi FlamholzCalifornia Institute of TechnologyVerified email at caltech.edu
Yinon M. Bar-OnCalifornia Institute of TechnologyVerified email at caltech.edu
Tania PereiraUniversity of Coimbra, INESC TEC - Institute for Systems and Computer EngineeringVerified email at lei.fis.uc.pt
Sol Maiam RiveraJohns Hopkins All Children's HospitalVerified email at jhmi.edu

Rui Alves

Professor, University of Lleida Medical School

Verified email at cmb.udl.cat - Homepage

Systems and Synthetic Biology Mathematical and Computational Biology Bioinformatics Biological


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The CHEMDNER corpus of chemicals and drugs and its annotation principles M Krallinger, O Rabal, F Leitner, M Vazquez, D Salgado, Z Lu, R Leaman, ... Journal of cheminformatics 7, 1-17, 2015	379	2015
Saccharomyces cerevisiae as a model organism: a comparative study H Karathia, E Vilaprinyo, A Sorribas, R Alves PloS one 6 (2), e16015, 2011	309	2011
Tools for kinetic modeling of biochemical networks R Alves, F Antunes, A Salvador Nature biotechnology 24 (6), 667-672, 2006	256	2006
Revisiting trade-offs between Rubisco kinetic parameters AI Flamholz, N Prywes, U Moran, D Davidi, YM Bar-On, LM Oltrogge, ... Biochemistry 58 (31), 3365-3376, 2019	201	2019
Lipid peroxidation in mitochondrial inner membranes. I. An integrative kinetic model F Antunes, A Salvador, HS Marinho, R Alves, RE Pinto Free Radical Biology and Medicine 21 (7), 917-943, 1996	192	1996
Comparative analysis of prototype two‐component systems with either bifunctional or monofunctional sensors: differences in molecular structure and physiological function R Alves, MA Savageau Molecular microbiology 48 (1), 25-51, 2003	125	2003
Relative amino acid composition signatures of organisms and environments A Moura, MA Savageau, R Alves PloS one 8 (10), e77319, 2013	115	2013
Evolution of enzymes in metabolism: a network perspective R Alves, RAG Chaleil, MJE Sternberg Journal of Molecular Biology 320 (4), 751-770, 2002	109	2002
Extending the method of mathematically controlled comparison to include numerical comparisons R Alves, MA Savageau Bioinformatics 16 (9), 786-798, 2000	99	2000
Hysteretic and graded responses in bacterial two‐component signal transduction OA Igoshin, R Alves, MA Savageau Molecular microbiology 68 (5), 1196-1215, 2008	95	2008
An in vitro system for the rapid functional characterization of genes involved in carotenoid biosynthesis and accumulation C Bai, SM Rivera, V Medina, R Alves, E Vilaprinyo, A Sorribas, R Canela, ... The Plant Journal 77 (3), 464-475, 2014	87	2014
Cooperativity and saturation in biochemical networks: a saturable formalism using Taylor series approximations A Sorribas, B Hernández‐Bermejo, E Vilaprinyo, R Alves Biotechnology and bioengineering 97 (5), 1259-1277, 2007	86	2007
Evaluating multi-locus phylogenies for species boundaries determination in the genus Diaporthe L Santos, A Alves, R Alves PeerJ 5, e3120, 2017	82	2017
Systemic properties of ensembles of metabolic networks: application of graphical and statistical methods to simple unbranched pathways R Alves, MA Savageau Bioinformatics 16 (6), 534-547, 2000	81	2000
Evolution and cellular function of monothiol glutaredoxins: involvement in iron–sulphur cluster assembly F Vilella, R Alves, MT Rodríguez‐Manzaneque, G Bellí, S Swaminathan, ... Comparative and functional genomics 5 (4), 328-341, 2004	76	2004
Effect of overall feedback inhibition in unbranched biosynthetic pathways R Alves, MA Savageau Biophysical journal 79 (5), 2290-2304, 2000	73	2000
Comparing systemic properties of ensembles of biological networks by graphical and statistical methods R Alves, MA Savageau Bioinformatics 16 (6), 527-533, 2000	61	2000
Predictive reconstruction of the mitochondrial iron‐sulfur cluster assembly metabolism. II. Role of glutaredoxin Grx5 R Alves, E Herrero, A Sorribas Proteins: Structure, Function, and Bioinformatics 57 (3), 481-492, 2004	54	2004
Evolution based on domain combinations: the case of glutaredoxins R Alves, E Vilaprinyo, A Sorribas, E Herrero BMC Evolutionary Biology 9, 1-14, 2009	52	2009
Use of physiological constraints to identify quantitative design principles for gene expression in yeast adaptation to heat shock E Vilaprinyo, R Alves, A Sorribas BMC bioinformatics 7, 1-20, 2006	52	2006

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