Carlos Lopez

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Michael L KleinTemple UniversityVerified email at temple.edu
Leonard A. HarrisUniversity of Arkansas, Department of Biomedical EngineeringVerified email at uark.edu
Vito QuarantaVanderbilt University School of MedicineVerified email at vanderbilt.edu
Goundla SrinivasNorth Carolina A&T State UniversityVerified email at ncat.edu
Peter K. SorgerHarvard Medical SchoolVerified email at hms.harvard.edu
John ShelleySchrödinger Fellow, Schrödinger, Inc.Verified email at schrodinger.com
Alexander L. R. LubbockRosalind Franklin InstituteVerified email at rfi.ac.uk
Darren TysonResearch Associate ProfessorVerified email at vanderbilt.edu
James PinoPino Consulting LLCVerified email at altoslabs.com
Jeremy L MuhlichDirector of Software Engineering, Harvard Medical School Laboratory of Systems PharmacologyVerified email at hms.harvard.edu
Peter J. RosskyChemistry, Rice UniversityVerified email at rice.edu
John A. BachmanFellow in Therapeutic Sciences, Harvard Medical SchoolVerified email at fas.harvard.edu
Shawn GarbettAssistant in Biostatistics, Vanderbilt University Medical CenterVerified email at vumc.org
Nicolas GiovambattistaBrooklyn College, CUNYVerified email at brooklyn.cuny.edu
Pablo DebenedettiProfessor of Chemical and Biological Engineering, Princeton UniversityVerified email at princeton.edu
Christian MeyerUniversity of Colorado BoulderVerified email at colorado.edu
Blake A. WilsonResearch Associate, The University of Texas at DallasVerified email at utdallas.edu
Arvind RamanathanArgonne National LaboratoryVerified email at anl.gov
Michael Kochenpostdoctoral scholar university of washingtonVerified email at uw.edu
Julien SageProfessor of Pediatrics and Genetics, Stanford UniversityVerified email at stanford.edu

Carlos Lopez

Other namesCarlos Federico Lopez, Carlos F. Lopez

Lead, Multiscale Modeling and Principal Scientist

Verified email at altoslabs.com

systems biology network dynamics parameter optimization multiscale modeling AI/ML


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Coarse grain models and the computer simulation of soft materials SO Nielsen, CF Lopez, G Srinivas, ML Klein Journal of Physics: Condensed Matter 16 (15), R481, 2004	634	2004
Understanding nature's design for a nanosyringe CF Lopez, SO Nielsen, PB Moore, ML Klein Proceedings of the National Academy of Sciences 101 (13), 4431-4434, 2004	368	2004
Hydrophobicity of protein surfaces: Separating geometry from chemistry N Giovambattista, CF Lopez, PJ Rossky, PG Debenedetti Proceedings of the National Academy of Sciences 105 (7), 2274-2279, 2008	298	2008
Programming biological models in Python using PySB CF Lopez, JL Muhlich, JA Bachman, PK Sorger Molecular systems biology 9 (1), 646, 2013	279	2013
Hydrogen bonding structure and dynamics of water at the dimyristoylphosphatidylcholine lipid bilayer surface from a molecular dynamics simulation CF Lopez, SO Nielsen, ML Klein, PB Moore The Journal of Physical Chemistry B 108 (21), 6603-6610, 2004	197	2004
Dynamical properties of a hydrated lipid bilayer from a multinanosecond molecular dynamics simulation PB Moore, CF Lopez, ML Klein Biophysical journal 81 (5), 2484-2494, 2001	193	2001
Rule‐based modeling: a computational approach for studying biomolecular site dynamics in cell signaling systems LA Chylek, LA Harris, CS Tung, JR Faeder, CF Lopez, WS Hlavacek Wiley Interdisciplinary Reviews: Systems Biology and Medicine 6 (1), 13-36, 2014	167	2014
A coarse grain model for n-alkanes parameterized from surface tension data SO Nielsen, CF Lopez, G Srinivas, ML Klein The Journal of chemical physics 119 (14), 7043-7049, 2003	161	2003
Mechanistic elements of protein cold denaturation CF Lopez, RK Darst, PJ Rossky The Journal of Physical Chemistry B 112 (19), 5961-5967, 2008	147	2008
Computer simulation studies of biomembranes using a coarse grain model CF Lopez, PB Moore, JC Shelley, MY Shelley, ML Klein Computer Physics Communications 147 (1-2), 1-6, 2002	129	2002
An unbiased metric of antiproliferative drug effect in vitro LA Harris, PL Frick, SP Garbett, KN Hardeman, BB Paudel, CF Lopez, ... Nature methods 13 (6), 497-500, 2016	117	2016
Systems-level network modeling of Small Cell Lung Cancer subtypes identifies master regulators and destabilizers DJ Wooten, SM Groves, DR Tyson, Q Liu, JS Lim, R Albert, CF Lopez, ... PLoS computational biology 15 (10), e1007343, 2019	112	2019
PyDREAM: high-dimensional parameter inference for biological models in python EM Shockley, JA Vrugt, CF Lopez Bioinformatics 34 (4), 695-697, 2018	83	2018
Probing membrane insertion activity of antimicrobial polymers via coarse-grain molecular dynamics CF Lopez, SO Nielsen, G Srinivas, WF DeGrado, ML Klein Journal of chemical theory and computation 2 (3), 649-655, 2006	83	2006
Structure and dynamics of model pore insertion into a membrane CF Lopez, SO Nielsen, B Ensing, PB Moore, ML Klein Biophysical Journal 88 (5), 3083-3094, 2005	76	2005
MuSyC is a consensus framework that unifies multi-drug synergy metrics for combinatorial drug discovery DJ Wooten, CT Meyer, ALR Lubbock, V Quaranta, CF Lopez Nature communications 12 (1), 4607, 2021	74*	2021
Molecular dynamics investigations of lipid Langmuir monolayers using a coarse-grain model SO Nielsen, CF Lopez, PB Moore, JC Shelley, ML Klein The Journal of Physical Chemistry B 107 (50), 13911-13917, 2003	74	2003
Charting the fragmented landscape of drug synergy CT Meyer, DJ Wooten, CF Lopez, V Quaranta Trends in pharmacological sciences 41 (4), 266-280, 2020	73	2020
Transmembrane peptide-induced lipid sorting and mechanism of Lα-to-inverted phase transition using coarse-grain molecular dynamics SO Nielsen, CF Lopez, I Ivanov, PB Moore, JC Shelley, ML Klein Biophysical journal 87 (4), 2107-2115, 2004	66	2004
Molecular dynamics investigation of membrane-bound bundles of the channel-forming transmembrane domain of viral protein U from the human immunodeficiency virus HIV-1 CF Lopez, M Montal, JK Blasie, ML Klein, PB Moore Biophysical journal 83 (3), 1259-1267, 2002	65	2002

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