| Correlation detection strategies in microbial data sets vary widely in sensitivity and precision LCX Weiss, Sophie, Will Van Treuren, Catherine Lozupone, Karoline Faust ... The ISME Journal. 10, 1669–1681, 2016 | 739 | 2016 |
| Marine bacterial, archaeal and protistan association networks reveal ecological linkages JA Steele, PD Countway, L Xia, PD Vigil, JM Beman, DY Kim, CET Chow, ... The ISME journal 5 (9), 1414-1425, 2011 | 654 | 2011 |
| Inferring domain–domain interactions from protein–protein interactions M Deng, S Mehta, F Sun, T Chen Genome research 12 (10), 1540-1548, 2002 | 637 | 2002 |
| VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data. J Ren, NA Ahlgren, YY Lu, JA Fuhrman, FZ Sun Microbiome 5 (1), 69, 2017 | 589 | 2017 |
| Identifying viruses from metagenomic data using deep learning J Ren, K Song, C Deng, NA Ahlgren, JA Fuhrman, Y Li, X Xie, R Poplin, ... Quantitative Biology 8 (1), 64-77, 2020 | 480 | 2020 |
| Identifying viruses from metagenomic data by deep learning J Ren, K Song, C Deng, NA Ahlgren, JA Fuhrman, Y Li, X Xie, F Sun arXiv preprint arXiv:1806.07810, 2018 | 480* | 2018 |
| Prediction of protein function using protein-protein interaction data M Deng, K Zhang, S Mehta, T Chen, F Sun Journal of Computational Biology 10 (6), 947-960, 2003 | 476 | 2003 |
| A dynamic programming algorithm for haplotype block partitioning K Zhang, M Deng, T Chen, MS Waterman, F Sun Proceedings of the National Academy of Sciences 99 (11), 7335-7339, 2002 | 449 | 2002 |
| Taq DNA polymerase slippage mutation rates measured by PCR and quasi‐likelihood analysis:(CA/GT) n and (A/T) n microsatellites D Shinde, Y Lai, F Sun, N Arnheim Nucleic acids research 31 (3), 974-980, 2003 | 391 | 2003 |
| Haplotype block structure and its applications to association studies: power and study designs K Zhang, P Calabrese, M Nordborg, F Sun The American Journal of Human Genetics 71 (6), 1386-1394, 2002 | 357 | 2002 |
| Local similarity analysis reveals unique associations among marine bacterioplankton species and environmental factors Q Ruan, D Dutta, MS Schwalbach, JA Steele, JA Fuhrman, F Sun Bioinformatics 22 (20), 2532-2538, 2006 | 318 | 2006 |
| The relationship between microsatellite slippage mutation rate and the number of repeat units Y Lai, F Sun Molecular biology and evolution 20 (12), 2123-2131, 2003 | 313 | 2003 |
| Alignment-free oligonucleotide frequency dissimilarity measure improves prediction of hosts from metagenomically-derived viral sequences NA Ahlgren, J Ren, YY Lu, JA Fuhrman, F Sun Nucleic Acids Research 45 (1), 39-53, 2017 | 300 | 2017 |
| A critical assessment of Mus musculus gene function prediction using integrated genomic evidence L Peña-Castillo, M Tasan, CL Myers, H Lee, T Joshi, C Zhang, Y Guan, ... Genome Biol 9 (Suppl 1), S2, 2008 | 300 | 2008 |
| CancerLocator: non-invasive cancer diagnosis and tissue-of-origin prediction using methylation profiles of cell-free DNA S Kang, Q Li, Q Chen, Y Zhou, S Park, G Lee, B Grimes, K Krysan, M Yu, ... Genome Biology 18 (1), 53, 2017 | 293 | 2017 |
| Clustering of Caucasian Leber hereditary optic neuropathy patients containing the 11778 or 14484 mutations on an mtDNA lineage. MD Brown, F Sun, DC Wallace American journal of human genetics 60 (2), 381, 1997 | 288 | 1997 |
| Critical Assessment of Metagenome Interpretation: the second round of challenges F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ... Nature Methods 19, 429–440, 2022 | 269 | 2022 |
| Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates LC Xia, JA Steele, JA Cram, ZG Cardon, SL Simmons, JJ Vallino, ... BMC Systems Biology 5 (Suppl 2), S15, 2011 | 251 | 2011 |
| Alignment-free sequence comparison (I): statistics and power G Reinert, D Chew, F Sun, MS Waterman Journal of Computational Biology 16 (12), 1615-1634, 2009 | 248 | 2009 |
| Haplotype block partitioning and tag SNP selection using genotype data and their applications to association studies K Zhang, ZS Qin, JS Liu, T Chen, MS Waterman, F Sun Genome Research 14 (5), 908-916, 2004 | 234 | 2004 |
Ting ChenProfessor of Computer Science, Tsinghua UniversityVerified email at tsinghua.edu.cn