| PremPS: Predicting the impact of missense mutations on protein stability Y Chen, H Lu, N Zhang, Z Zhu, S Wang, M Li PLOS Computational Biology 16 (12), e1008543, 2020 | 210 | 2020 |
| MutaBind2: predicting the impacts of single and multiple mutations on protein-protein interactions N Zhang, Y Chen, H Lu, F Zhao, RV Alvarez, A Goncearenco, ... Iscience, 100939, 2020 | 149 | 2020 |
| MutaBind estimates and interprets the effects of sequence variants on protein–protein interactions M Li, FL Simonetti, A Goncearenco, AR Panchenko Nucleic acids research, gkw374, 2016 | 141 | 2016 |
| Predicting the Impact of Missense Mutations on Protein–Protein Binding Affinity M Li, M Petukh, E Alexov, AR Panchenko Journal of Chemical Theory and Computation 10 (4), 1770-1780, 2014 | 124 | 2014 |
| Predicting binding free energy change caused by point mutations with knowledge-modified MM/PBSA method M Petukh, M Li, E Alexov PLoS Comput Biol 11 (7), e1004276, 2015 | 118 | 2015 |
| Finding driver mutations in cancer: Elucidating the role of background mutational processes AL Brown, M Li, A Goncearenco, AR Panchenko PLoS computational biology 15 (4), e1006981, 2019 | 97 | 2019 |
| Exploring background mutational processes to decipher cancer genetic heterogeneity A Goncearenco, SL Rager, M Li, QX Sang, IB Rogozin, AR Panchenko Nucleic acids research 45 (W1), W514-W522, 2017 | 81 | 2017 |
| PremPDI estimates and interprets the effects of missense mutations on protein-DNA interactions N Zhang, Y Chen, F Zhao, Q Yang, FL Simonetti, M Li PLoS computational biology 14 (12), e1006615, 2018 | 47 | 2018 |
| Molecular dynamics studies of the 3D structure and planar ligand binding of a quadruplex dimer MH Li, Q Luo, XG Xue, ZS Li Journal of molecular modeling 17 (3), 515-526, 2011 | 45 | 2011 |
| Exploring Protein-Protein Interactions as Drug Targets for Anti-cancer Therapy with In Silico Workflows A Goncearenco, M Li, FL Simonetti, BA Shoemaker, AR Panchenko Proteomics for Drug Discovery, 221-236, 2017 | 44 | 2017 |
| Probing the Structural and Energetic Basis of Kinesin–Microtubule Binding Using Computational Alanine-Scanning Mutagenesis M Li, W Zheng Biochemistry 50 (40), 8645-8655, 2011 | 41 | 2011 |
| Balancing protein stability and activity in cancer: a new approach for identifying driver mutations affecting CBL ubiquitin ligase activation M Li, SC Kales, K Ma, BA Shoemaker, J Crespo-Barreto, AL Cangelosi, ... Cancer research 76 (3), 561-571, 2016 | 35 | 2016 |
| All-Atom Structural Investigation of Kinesin–Microtubule Complex Constrained by High-Quality Cryo-Electron-Microscopy Maps M Li, W Zheng Biochemistry 51 (25), 5022-5032, 2012 | 29 | 2012 |
| The 3D structures of G-Quadruplexes of HIV-1 integrase inhibitors: molecular dynamics simulations in aqueous solution and in the gas phase MH Li, YH Zhou, Q Luo, ZS Li Journal of molecular modeling 16 (4), 645-657, 2010 | 28 | 2010 |
| PremPLI: a machine learning model for predicting the effects of missense mutations on protein-ligand Interactions T Sun, Y Chen, Y Wen, Z Zhu, M Li Communications biology 4 (1), 1-11, 2021 | 27 | 2021 |
| Computational approaches to prioritize cancer driver missense mutations F Zhao, L Zheng, A Goncearenco, A Panchenko, M Li International journal of molecular sciences 19 (7), 2113, 2018 | 26 | 2018 |
| Annotating mutational effects on proteins and protein interactions: designing novel and revisiting existing protocols M Li, A Goncearenco, AR Panchenko Proteomics, 235-260, 2017 | 25 | 2017 |
| PremPRI: Predicting the Effects of Missense Mutations on Protein–RNA Interactions N Zhang, H Lu, Y Chen, Z Zhu, Q Yang, S Wang, M Li International journal of molecular sciences 21 (15), 5560, 2020 | 22 | 2020 |
| All-Atom Molecular Dynamics Simulations of Actin–Myosin Interactions: A Comparative Study of Cardiac α Myosin, β Myosin, and Fast Skeletal Muscle Myosin M Li, W Zheng Biochemistry 52 (47), 8393-8405, 2013 | 22 | 2013 |
| Molecular dynamics study on the interactions of porphyrin with two antiparallel human telomeric quadruplexes MH Li, Q Luo, ZS Li The Journal of Physical Chemistry B 114 (18), 6216-6224, 2010 | 20 | 2010 |