| Incorporating diffusion in complex geometries into stochastic chemical kinetics simulations SA Isaacson, CS Peskin SIAM Journal on Scientific Computing 28 (1), 47-74, 2006 | 190 | 2006 |
| The reaction-diffusion master equation as an asymptotic approximation of diffusion to a small target SA Isaacson SIAM Journal on Applied Mathematics 70 (1), 77-111, 2009 | 176 | 2009 |
| A convergent reaction-diffusion master equation SA Isaacson Journal of Chemical Physics 139 (5), 054101 (12pp), 2013 | 120 | 2013 |
| Reaction-diffusion master equation, diffusion-limited reactions, and singular potentials SA Isaacson, D Isaacson Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 80 (6 …, 2009 | 58 | 2009 |
| The influence of volume exclusion by chromatin on the time required to find specific DNA binding sites by diffusion SA Isaacson, DM McQueen, CS Peskin Proceedings of the National Academy of Sciences 108 (9), 3815-3820, 2011 | 55 | 2011 |
| Relationship between the reaction–diffusion master equation and particle tracking models SA Isaacson Journal of Physics A: Mathematical and Theoretical 41 (6), 065003, 2008 | 52 | 2008 |
| Imaging and characterizing cells using tomography M Do, SA Isaacson, G McDermott, MA Le Gros, CA Larabell Archives of biochemistry and biophysics 581, 111-121, 2015 | 45 | 2015 |
| A comparison of bimolecular reaction models for stochastic reaction–diffusion systems IC Agbanusi, SA Isaacson Bulletin of mathematical biology 76 (4), 922-946, 2014 | 40 | 2014 |
| Catalyst: Fast and flexible modeling of reaction networks TE Loman, Y Ma, V Ilin, S Gowda, N Korsbo, N Yewale, C Rackauckas, ... PLOS Computational Biology 19 (10), e1011530, 2023 | 37* | 2023 |
| Uniform asymptotic approximation of diffusion to a small target SA Isaacson, J Newby Physical Review E 88 (1), 012820 (13pp), 2013 | 34 | 2013 |
| Biophysical assay for tethered signaling reactions reveals tether-controlled activity for the phosphatase SHP-1 J Goyette, CS Salas, N Coker-Gordon, M Bridge, SA Isaacson, J Allard, ... Science advances 3 (3), e1601692, 2017 | 32 | 2017 |
| Numerical solution of linear Volterra integral equations of the second kind with sharp gradients SA Isaacson, RM Kirby Journal of computational and applied mathematics 235 (14), 4283-4301, 2011 | 30 | 2011 |
| Strong intracellular signal inactivation produces sharper and more robust signaling from cell membrane to nucleus J Ma, M Do, MA Le Gros, CS Peskin, CA Larabell, Y Mori, SA Isaacson PLoS computational biology 16 (11), e1008356, 2020 | 29 | 2020 |
| An unstructured mesh convergent reaction–diffusion master equation for reversible reactions SA Isaacson, Y Zhang Journal of Computational Physics 374, 954-983, 2018 | 28 | 2018 |
| Mean field limits of particle-based stochastic reaction-diffusion models SA Isaacson, J Ma, K Spiliopoulos SIAM Journal on Mathematical Analysis 54 (1), 453-511, 2022 | 25 | 2022 |
| A First-Passage Kinetic Monte Carlo method for reaction–drift–diffusion processes AJ Mauro, JK Sigurdsson, J Shrake, PJ Atzberger, SA Isaacson Journal of Computational Physics 259, 536-567, 2014 | 25 | 2014 |
| Dephosphorylation accelerates the dissociation of ZAP70 from the T cell receptor J Goyette, D Depoil, Z Yang, SA Isaacson, J Allard, PA van der Merwe, ... Proceedings of the National Academy of Sciences 119 (9), e2116815119, 2022 | 22* | 2022 |
| Reactive boundary conditions as limits of interaction potentials for Brownian and Langevin dynamics SJ Chapman, R Erban, SA Isaacson SIAM Journal on Applied Mathematics 76 (1), 368-390, 2016 | 21 | 2016 |
| The influence of spatial variation in chromatin density determined by X-ray tomograms on the time to find DNA binding sites SA Isaacson, CA Larabell, MA Le Gros, DM McQueen, CS Peskin Bulletin of mathematical biology 75, 2093-2117, 2013 | 18 | 2013 |
| The influence of molecular reach and diffusivity on the efficacy of membrane-confined reactions Y Zhang, L Clemens, J Goyette, J Allard, O Dushek, SA Isaacson Biophysical Journal 117 (7), 1189-1201, 2019 | 16 | 2019 |
Omer DushekProfessor, University of OxfordVerified email at path.ox.ac.uk
