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Simultaneous sequencing of genetic and epigenetic bases in DNA J Füllgrabe, WS Gosal, P Creed, S Liu, CK Lumby, DJ Morley, TWB Ost, ... Nature Biotechnology 41 (10), 1457-1464, 2023 | 52 | 2023 |
Transposon‐driven transcription is a conserved feature of vertebrate spermatogenesis and transcript evolution MP Davis, C Carrieri, HK Saini, S van Dongen, T Leonardi, G Bussotti, ... EMBO reports 18 (7), 1231-1247, 2017 | 49 | 2017 |
IL10RA modulates crizotinib sensitivity in NPM1-ALK+ anaplastic large cell lymphoma N Prokoph, NA Probst, LC Lee, JM Monahan, JD Matthews, HC Liang, ... Blood, The Journal of the American Society of Hematology 136 (14), 1657-1669, 2020 | 46 | 2020 |
A survey of ancient conserved non-coding elements in the PAX6 locus reveals a landscape of interdigitated cis-regulatory archipelagos S Bhatia, J Monahan, V Ravi, P Gautier, E Murdoch, S Brenner, ... Developmental biology 387 (2), 214-228, 2014 | 44 | 2014 |
Short- and long-range cis interactions between integrated HPV genomes and cellular chromatin dysregulate host gene expression in early cervical carcinogenesis IJ Groves, ELA Drane, M Michalski, JM Monahan, CG Scarpini, SP Smith, ... PLoS pathogens 17 (8), e1009875, 2021 | 29 | 2021 |
Shared regulatory sites are abundant in the human genome and shed light on genome evolution and disease pleiotropy P Tong, J Monahan, JGD Prendergast PLoS genetics 13 (3), e1006673, 2017 | 17 | 2017 |
The medaka inbred kiyosu-karlsruhe (MIKK) panel T Fitzgerald, I Brettell, A Leger, N Wolf, N Kusminski, J Monahan, C Barton, ... Genome Biology 23 (1), 59, 2022 | 15 | 2022 |
Accurate simultaneous sequencing of genetic and epigenetic bases in DNA J Füllgrabe, WS Gosal, P Creed, S Liu, CK Lumby, DJ Morley, TWB Ost, ... bioRxiv, 2022.07. 08.499285, 2022 | 10 | 2022 |
Genomic variations and epigenomic landscape of the Medaka Inbred Kiyosu-Karlsruhe (MIKK) panel A Leger, I Brettell, J Monahan, C Barton, N Wolf, N Kusminski, C Herder, ... Genome Biology 23 (1), 58, 2022 | 9 | 2022 |
Brg1 and npm-alk are co-regulated in anaplastic large-cell lymphoma; brg1 is a potential therapeutic target in alcl GD Garland, SP Ducray, L Jahangiri, P Pucci, GA Amos Burke, ... Cancers 14 (1), 151, 2021 | 4 | 2021 |
Three-dimensional interactions between integrated HPV genomes and cellular chromatin dysregulate host gene expression in early cervical carcinogenesis IJ Groves, ELA Drane, M Michalski, JM Monahan, CG Scarpini, SP Smith, ... bioRxiv, 2021.02. 03.429496, 2021 | 3 | 2021 |
FEHAT: efficient, large scale and automated heartbeat detection in Medaka fish embryos MS Ferreira, S Stricker, T Fitzgerald, J Monahan, F Defranoux, P Watson, ... Bioinformatics 40 (12), btae664, 2024 | | 2024 |
Leveraging targeted epigenetic and genetic detection for cost-effective cancer classification R Crawford, B Krajacich, E Lleshi, A Negrea, L Andreasen, J Fullgrabe, ... Cancer Research 84 (6_Supplement), 6085-6085, 2024 | | 2024 |
Simultaneous measurement of genetics and epigenetics enables new biological insight N Harding, P Creed, D Currie, S Jamal, D Morley, F Puddu, C Lumby, ... EUROPEAN JOURNAL OF HUMAN GENETICS 32, 618-618, 2024 | | 2024 |
Additional file 5 of Genomic variations and epigenomic landscape of the Medaka Inbred Kiyosu-Karlsruhe (MIKK) panel A Leger, I Brettell, J Monahan, C Barton, N Wolf, N Kusminski, C Herder, ... (No Title), 2022 | | 2022 |
Computational Analysis of Transcriptional Regulation JM Monahan | | 2020 |
Accurate simultaneous sequencing of genetic and epigenetic bases in DNA Authors and affiliations J Füllgrabe, WS Gosal, P Creed, S Liu, CK Lumby, DJ Morley, TWB Ost, ... | | |