Daniel Sage

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Michael UnserProfessor, Biomedical Imaging Group, Ecole Polytechnique Fédérale de Lausanne (EPFL), SwitzerlandVerified email at epfl.ch
Alessandra GriffaUNIGE & EPFL, SwitzerlandVerified email at epfl.ch
Laurène DonatiExecutive Director, EPFL Center for ImagingVerified email at epfl.ch
Dimitri Van De VilleProfessor, Neuro-X Institute, EPF Lausanne and University of GenevaVerified email at epfl.ch
Nikos StergiopulosProfessor of BioengineeringVerified email at epfl.ch
Zsuzsanna PüspökiEPFLVerified email at epfl.ch
DibnerUniversity of GenevaVerified email at hcuge.ch
Thomas PengoDirector of Research Informatics, U of MinnesotaVerified email at umn.edu
Thanh-an PhamEcole Polytechnique Fédérale de LausanneVerified email at epfl.ch
Arrate Muñoz BarrutiaProfessor, Univ. Carlos III de Madrid; Instituto de Investigación Sanitaria Gregorio MarañónVerified email at ing.uc3m.es
Estibaliz Gómez-de-MariscalPostdoc Henriques Lab, Gulbenkian Institute for Molecular Medicine, Oeiras, PortugalVerified email at gimm.pt
Aurelien F. StalderSiemens HealthineersVerified email at siemens-healthineers.com
Arne SeitzHead BioImaging & Optics Platform (BIOP), EPFLVerified email at epfl.ch
Carlos García-López-de-HaroVerified email at alumnos.uc3m.es
Suliana ManleyProfessor of Physics, EPFLVerified email at epfl.ch
Susan M. GasserFriedrich Miescher Institute for Biomedical ResearchVerified email at fmi.ch
Daniel WüstnerProfessor, University of Southern DenmarkVerified email at bmb.sdu.dk
Ricardo HenriquesPI at ITQB NOVA and Hon. Prof. at UCL (LMCB). Previously PI at Crick, IGC and GIMMVerified email at itqb.unl.pt
Jean-Baptiste SibaritaVerified email at u-bordeaux.fr
Séamus HoldenProfessor of Microbial Biophysics, University of Warwick, UKVerified email at warwick.ac.uk

Daniel Sage

Biomedical Imaging Group, Center for Imaging, EPFL, Lausanne, Switzerland

Verified email at epfl.ch - Homepage

Bioimage informatics image processing open software super-resolution microscopy segmentation and tracking


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Experimental investigation of collagen waviness and orientation in the arterial adventitia using confocal laser scanning microscopy R Rezakhaniha, A Agianniotis, JTC Schrauwen, A Griffa, D Sage, ... Biomechanics and modeling in mechanobiology 11, 461-473, 2012	1158	2012
A snake-based approach to accurate determination of both contact points and contact angles AF Stalder, G Kulik, D Sage, L Barbieri, P Hoffmann Colloids and surfaces A: physicochemical and engineering aspects 286 (1-3 …, 2006	1073	2006
Low-bond axisymmetric drop shape analysis for surface tension and contact angle measurements of sessile drops AF Stalder, T Melchior, M Müller, D Sage, T Blu, M Unser Colloids and Surfaces A: Physicochemical and Engineering Aspects 364 (1-3 …, 2010	882	2010
DeconvolutionLab2: An open-source software for deconvolution microscopy D Sage, L Donati, F Soulez, D Fortun, G Schmit, A Seitz, R Guiet, ... Methods 115, 28-41, 2017	613	2017
Automatic tracking of individual fluorescence particles: application to the study of chromosome dynamics D Sage, FR Neumann, F Hediger, SM Gasser, M Unser IEEE transactions on image processing 14 (9), 1372-1383, 2005	577	2005
Transforms and operators for directional bioimage analysis: a survey Z Püspöki, M Storath, D Sage, M Unser Focus on bio-image informatics, 69-93, 2016	499	2016
Complex wavelets for extended depth‐of‐field: A new method for the fusion of multichannel microscopy images B Forster, D Van De Ville, J Berent, D Sage, M Unser Microscopy research and technique 65 (1‐2), 33-42, 2004	495	2004
Quantitative evaluation of software packages for single-molecule localization microscopy D Sage, H Kirshner, T Pengo, N Stuurman, J Min, S Manley, M Unser Nature methods 12 (8), 717-724, 2015	477	2015
Super-resolution fight club: assessment of 2D and 3D single-molecule localization microscopy software D Sage, TA Pham, H Babcock, T Lukes, T Pengo, J Chao, R Velmurugan, ... Nature methods 16 (5), 387-395, 2019	353	2019
Effect of aging on elastin functionality in human cerebral arteries E Fonck, GG Feigl, J Fasel, D Sage, M Unser, DA Rüfenacht, ... Stroke 40 (7), 2552-2556, 2009	337	2009
3‐D PSF fitting for fluorescence microscopy: implementation and localization application H Kirshner, F Aguet, D Sage, M Unser Journal of microscopy 249 (1), 13-25, 2013	336	2013
Fast Bilateral Filtering Using Trigonometric Range Kernels KN Chaudhury, D Sage, M Unser IEEE transactions on image processing 20 (12), 3376-3382, 2011	314	2011
Phosphorylation does not prompt, nor prevent, the formation of α-synuclein toxic species in a rat model of Parkinson's disease S Azeredo da Silveira, BL Schneider, C Cifuentes-Diaz, D Sage, ... Human molecular genetics 18 (5), 872-887, 2009	269	2009
Multiresolution monogenic signal analysis using the Riesz–Laplace wavelet transform M Unser, D Sage, D Van De Ville IEEE Transactions on Image Processing 18 (11), 2402-2418, 2009	256	2009
PixFRET, an ImageJ plug‐in for FRET calculation that can accommodate variations in spectral bleed‐throughs JN Feige, D Sage, W Wahli, B Desvergne, L Gelman Microscopy research and technique 68 (1), 51-58, 2005	252	2005
DeepImageJ: A user-friendly environment to run deep learning models in ImageJ E Gómez-de-Mariscal, C García-López-de-Haro, W Ouyang, L Donati, ... Nature methods 18 (10), 1192-1195, 2021	217	2021
Predicting stem cell fate changes by differential cell cycle progression patterns M Roccio, D Schmitter, M Knobloch, Y Okawa, D Sage, MP Lutolf Development 140 (2), 459-470, 2013	195	2013
Circadian gene expression is resilient to large fluctuations in overall transcription rates C Dibner, D Sage, M Unser, C Bauer, T d'Eysmond, F Naef, U Schibler The EMBO journal 28 (2), 123-134, 2009	174	2009
Teaching image-processing programming in Java D Sage, M Unser IEEE Signal Processing Magazine 20 (6), 43-52, 2003	138	2003
Autonomous and self-sustained circadian oscillators displayed in human islet cells P Pulimeno, T Mannic, D Sage, L Giovannoni, P Salmon, S Lemeille, ... Diabetologia 56, 497-507, 2013	122	2013

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