| Fast and sensitive taxonomic classification for metagenomics with Kaiju P Menzel, KL Ng, A Krogh Nature Communications 7, 11257, 2016 | 1887 | 2016 |
| Estimating infectiousness throughout SARS-CoV-2 infection course TC Jones, G Biele, B Mühlemann, T Veith, J Schneider, ... Science 373 (6551), eabi5273, 2021 | 548 | 2021 |
| Comparative metagenomics of eight geographically remote terrestrial hot springs P Menzel, SR Gudbergsdóttir, AG Rike, L Lin, Q Zhang, P Contursi, ... Microbial ecology 70 (2), 411-424, 2015 | 124 | 2015 |
| The tedious task of finding homologous noncoding RNA genes P Menzel, J Gorodkin, PF Stadler RNA 15 (12), 2075-2082, 2009 | 69 | 2009 |
| Novel viral genomes identified from six metagenomes reveal wide distribution of archaeal viruses and high viral diversity in terrestrial hot springs SR Gudbergsdóttir, P Menzel, A Krogh, M Young, X Peng Environmental microbiology 18 (3), 863-874, 2016 | 66 | 2016 |
| Discovering novel hydrolases from hot environments R Wohlgemuth, J Littlechild, D Monti, K Schnorr, T van Rossum, B Siebers, ... Biotechnology advances 36 (8), 2077-2100, 2018 | 50 | 2018 |
| Isolation and characterization of the first xylanolytic hyperthermophilic euryarchaeon Thermococcus sp. strain 2319x1 and its unusual multidomain glycosidase SN Gavrilov, C Stracke, K Jensen, P Menzel, V Kallnik, A Slesarev, ... Frontiers in Microbiology 7, 552, 2016 | 40 | 2016 |
| The PETfold and PETcofold web servers for intra-and intermolecular structures of multiple RNA sequences SE Seemann, P Menzel, R Backofen, J Gorodkin Nucleic acids research 39 (suppl_2), W107-W111, 2011 | 39 | 2011 |
| Taxonomic classification method for metagenomics based on core protein families with Core-Kaiju A Tovo, P Menzel, A Krogh, M Cosentino Lagomarsino, S Suweis Nucleic acids research 48 (16), e93-e93, 2020 | 29 | 2020 |
| A gene expression atlas of embryonic neurogenesis in Drosophila reveals complex spatiotemporal regulation of lncRNAs AL McCorkindale, P Wahle, S Werner, I Jungreis, P Menzel, CJ Shukla, ... Development 146 (6), 2019 | 26 | 2019 |
| Sugar metabolism of the first thermophilic planctomycete Thermogutta terrifontis: comparative genomic and transcriptomic approaches AG Elcheninov, P Menzel, SR Gudbergsdottir, AI Slesarev, VV Kadnikov, ... Frontiers in microbiology 8, 2140, 2017 | 23 | 2017 |
| Transcriptional dynamics of microRNAs and their targets during Drosophila neurogenesis P Menzel, AL McCorkindale, SR Stefanov, RP Zinzen, IM Meyer RNA biology 16 (1), 69-81, 2019 | 22 | 2019 |
| RILogo: visualizing RNA–RNA interactions P Menzel, SE Seemann, J Gorodkin Bioinformatics 28 (19), 2523-2526, 2012 | 20 | 2012 |
| Acidic skin care promotes cutaneous microbiome recovery and skin physiology in an acute stratum corneum stress model JW Fluhr, P Menzel, R Schwarzer, B Kaestle, M Arens-Corell, L Praefke, ... Skin Pharmacology and Physiology, 2022 | 17 | 2022 |
| SARS-CoV-2 rapid antigen test sensitivity and viral load in newly symptomatic hospital employees in Berlin, Germany, December, 2020 to February, 2022: an observational study L Meiners, J Horn, TC Jones, B Mühlemann, ML Schmidt, F Walper, ... The Lancet Microbe 5 (6), e538-e546, 2024 | 16* | 2024 |
| Variability and bias in microbiome metagenomic sequencing: an interlaboratory study comparing experimental protocols SP Forry, SL Servetas, JG Kralj, K Soh, M Hadjithomas, R Cano, M Carlin, ... Scientific Reports 14 (1), 9785, 2024 | 15 | 2024 |
| maxAlike: maximum likelihood-based sequence reconstruction with application to improved primer design for unknown sequences P Menzel, PF Stadler, J Gorodkin Bioinformatics 27 (3), 317-325, 2011 | 14 | 2011 |
| On the Accuracy of Short Read Mapping P Menzel, J Frellsen, M Plass, SH Rasmussen, A Krogh Deep Sequencing Data Analysis, 39-59, 2013 | 12 | 2013 |
| Algorithms for mapping high-throughput DNA sequences J Frellsen, P Menzel, A Krogh Comprehensive Biomedical Physics, 41-50, 2014 | 10 | 2014 |
| Outbreak of Pandoraea commovens Infections among Non–Cystic Fibrosis Intensive Care Patients, Germany, 2019–2021 T Kruis, P Menzel, R Schwarzer, S Wiesener, F Schoenrath, F Klefisch, ... Emerging Infectious Diseases 29 (11), 2229, 2023 | 5 | 2023 |
Anders KroghDepartment of Computer Science and Center for Health Data Science, University of CopenhagenVerified email at di.ku.dk