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| The transcriptional landscape of the mammalian genome P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ... science 309 (5740), 1559-1563, 2005 | 4168 | 2005 |
| Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments BJ Haas, SL Salzberg, W Zhu, M Pertea, JE Allen, J Orvis, O White, ... Genome biology 9, 1-22, 2008 | 3026 | 2008 |
| Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii JM Carlton, SV Angiuoli, BB Suh, TW Kooij, M Pertea, JC Silva, ... Nature 419 (6906), 512-519, 2002 | 918 | 2002 |
| The Genome of the Basidiomycetous Yeast and Human Pathogen Cryptococcus neoformans BJ Loftus, E Fung, P Roncaglia, D Rowley, P Amedeo, D Bruno, ... Science 307 (5713), 1321-1324, 2005 | 886 | 2005 |
| Draft genome of the filarial nematode parasite Brugia malayi E Ghedin, S Wang, D Spiro, E Caler, Q Zhao, J Crabtree, JE Allen, ... Science 317 (5845), 1756-1760, 2007 | 732 | 2007 |
| Genome sequence of Theileria parva, a bovine pathogen that transforms lymphocytes MJ Gardner, R Bishop, T Shah, EP De Villiers, JM Carlton, N Hall, Q Ren, ... Science 309 (5731), 134-137, 2005 | 399 | 2005 |
| Scalable metagenomic taxonomy classification using a reference genome database SK Ames, DA Hysom, SN Gardner, GS Lloyd, MB Gokhale, JE Allen Bioinformatics 29 (18), 2253-2260, 2013 | 240 | 2013 |
| Sequence of Plasmodium falciparum chromosomes 2, 10, 11 and 14 MJ Gardner, SJ Shallom, JM Carlton, SL Salzberg, V Nene, A Shoaibi, ... Nature 419 (6906), 531-534, 2002 | 238 | 2002 |
| Improved protein–ligand binding affinity prediction with structure-based deep fusion inference D Jones, H Kim, X Zhang, A Zemla, G Stevenson, WFD Bennett, ... Journal of chemical information and modeling 61 (4), 1583-1592, 2021 | 226 | 2021 |
| JIGSAW: integration of multiple sources of evidence for gene prediction JE Allen, SL Salzberg Bioinformatics 21 (18), 3596-3603, 2005 | 205 | 2005 |
| Computational gene prediction using multiple sources of evidence JE Allen, M Pertea, SL Salzberg Genome research 14 (1), 142-148, 2004 | 188 | 2004 |
| Predicting tumor cell line response to drug pairs with deep learning F Xia, M Shukla, T Brettin, C Garcia-Cardona, J Cohn, JE Allen, S Maslov, ... BMC bioinformatics 19, 71-79, 2018 | 139 | 2018 |
| FDA-ARGOS is a database with public quality-controlled reference genomes for diagnostic use and regulatory science H Sichtig, T Minogue, Y Yan, C Stefan, A Hall, L Tallon, L Sadzewicz, ... Nature communications 10 (1), 3313, 2019 | 136 | 2019 |
| Metagenomic analysis of the airborne environment in urban spaces NA Be, JB Thissen, VY Fofanov, JE Allen, M Rojas, G Golovko, Y Fofanov, ... Microbial Ecology 69, 346-355, 2015 | 116 | 2015 |
| Detection of antimicrobial resistance genes associated with the International Space Station environmental surfaces C Urbaniak, AC Sielaff, KG Frey, JE Allen, N Singh, C Jaing, K Wheeler, ... Scientific reports 8 (1), 814, 2018 | 115 | 2018 |
| Microbiomes of the built environment: a research agenda for indoor microbiology, human health, and buildings National Academies of Sciences, Division on Engineering, ... National Academies Press, 2017 | 105 | 2017 |
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Kevin S. McLoughlinLawrence Livermore National LaboratoryVerified email at llnl.gov