ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis JM Granja, MR Corces, SE Pierce, ST Bagdatli, H Choudhry, HY Chang, ... Nature genetics 53 (3), 403-411, 2021 | 931 | 2021 |
Advances in hypoxia-inducible factor biology H Choudhry, AL Harris Cell metabolism 27 (2), 281-298, 2018 | 811 | 2018 |
Molecular choreography of acute exercise K Contrepois, S Wu, KJ Moneghetti, D Hornburg, S Ahadi, MS Tsai, ... Cell 181 (5), 1112-1130. e16, 2020 | 363 | 2020 |
Tumor hypoxia induces nuclear paraspeckle formation through HIF-2α dependent transcriptional activation of NEAT1 leading to cancer cell survival H Choudhry, A Albukhari, M Morotti, S Haider, D Moralli, J Smythies, ... Oncogene 34 (34), 4482-4490, 2015 | 359 | 2015 |
Inherent DNA‐binding specificities of the HIF‐1α and HIF‐2α transcription factors in chromatin JA Smythies, M Sun, N Masson, R Salama, PD Simpson, E Murray, ... EMBO reports 20 (1), e46401, 2019 | 206 | 2019 |
Integrated analysis of microRNA and mRNA expression and association with HIF binding reveals the complexity of microRNA expression regulation under hypoxia C Camps, HK Saini, DR Mole, H Choudhry, M Reczko, ... Molecular cancer 13, 1-21, 2014 | 191 | 2014 |
Carbon nanotube field-effect transistor (CNT-FET)-based biosensor for rapid detection of SARS-CoV-2 (COVID-19) surface spike protein S1 MA Zamzami, G Rabbani, A Ahmad, AA Basalah, WH Al-Sabban, SN Ahn, ... Bioelectrochemistry 143, 107982, 2022 | 186 | 2022 |
Prospects of IL‐2 in cancer immunotherapy H Choudhry, N Helmi, WH Abdulaal, M Zeyadi, MA Zamzami, W Wu, ... BioMed research international 2018 (1), 9056173, 2018 | 170 | 2018 |
Extensive regulation of the non‐coding transcriptome by hypoxia: role of HIF in releasing paused RNA pol2 H Choudhry, J Schödel, S Oikonomopoulos, C Camps, S Grampp, ... EMBO reports 15 (1), 70-76, 2014 | 169 | 2014 |
Thymoquinone synergizes gemcitabine anti-breast cancer activity via modulating its apoptotic and autophagic activities HA Bashmail, AA Alamoudi, A Noorwali, GA Hegazy, G AJabnoor, ... Scientific reports 8 (1), 11674, 2018 | 140 | 2018 |
Signalling pathways in UHRF1-dependent regulation of tumor suppressor genes in cancer M Alhosin, Z Omran, MA Zamzami, AL Al-Malki, H Choudhry, M Mousli, ... Journal of Experimental & Clinical Cancer Research 35, 1-11, 2016 | 131 | 2016 |
Hypoxia-induced switch in SNAT2/SLC38A2 regulation generates endocrine resistance in breast cancer M Morotti, E Bridges, A Valli, H Choudhry, H Sheldon, S Wigfield, N Gray, ... Proceedings of the National Academy of Sciences 116 (25), 12452-12461, 2019 | 126 | 2019 |
The tumour hypoxia induced non-coding transcriptome H Choudhry, AL Harris, A McIntyre Molecular aspects of medicine 47, 35-53, 2016 | 123 | 2016 |
Hypermethylation of CpG islands and shores around specific microRNAs and mirtrons is associated with the phenotype and presence of bladder cancer E Dudziec, S Miah, HMZ Choudhry, HC Owen, S Blizard, M Glover, ... Clinical cancer research 17 (6), 1287-1296, 2011 | 121 | 2011 |
Comprehensive molecular biomarker identification in breast cancer brain metastases HJ Schulten, M Bangash, S Karim, A Dallol, D Hussein, A Merdad, ... Journal of translational medicine 15, 1-20, 2017 | 115 | 2017 |
Origin, potential therapeutic targets and treatment for coronavirus disease (COVID-19) MS Nadeem, MA Zamzami, H Choudhry, BN Murtaza, I Kazmi, H Ahmad, ... Pathogens 9 (4), 307, 2020 | 106 | 2020 |
Joint single-cell DNA accessibility and protein epitope profiling reveals environmental regulation of epigenomic heterogeneity X Chen, UM Litzenburger, Y Wei, AN Schep, EL LaGory, H Choudhry, ... Nature communications 9 (1), 4590, 2018 | 85 | 2018 |
Fabrication, optimization, and characterization of umbelliferone β-D-galactopyranoside-loaded PLGA nanoparticles in treatment of hepatocellular carcinoma: in vitro and in vivo … V Kumar, PC Bhatt, M Rahman, G Kaithwas, H Choudhry, FA Al-Abbasi, ... International Journal of Nanomedicine, 6747-6758, 2017 | 83 | 2017 |
Capture‐C reveals preformed chromatin interactions between HIF‐binding sites and distant promoters JL Platt, R Salama, J Smythies, H Choudhry, JOJ Davies, JR Hughes, ... EMBO reports 17 (10), 1410-1421, 2016 | 81 | 2016 |
miRNAs as circulating biomarkers for Alzheimer’s disease and Parkinson’s disease G Mushtaq, N H. Greig, F Anwar, M A. Zamzami, H Choudhry, M M. Shaik, ... Medicinal chemistry 12 (3), 217-225, 2016 | 81 | 2016 |