| Technology dictates algorithms: recent developments in read alignment M Alser, J Rotman, D Deshpande, K Taraszka, H Shi, PI Baykal, HT Yang, ... Genome biology 22 (1), 249, 2021 | 134 | 2021 |
| Dietary supplements and nutraceuticals under investigation for COVID-19 prevention and treatment R Lordan, HM Rando, CS Greene Msystems 6 (3), 10.1128/msystems. 00122-21, 2021 | 104 | 2021 |
| Accurate assembly of minority viral haplotypes from next-generation sequencing through efficient noise reduction S Knyazev, V Tsyvina, A Shankar, A Melnyk, A Artyomenko, T Malygina, ... Nucleic acids research 49 (17), e102-e102, 2021 | 84* | 2021 |
| QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data P Skums, A Zelikovsky, R Singh, W Gussler, Z Dimitrova, S Knyazev, ... Bioinformatics 34 (1), 163-170, 2018 | 80 | 2018 |
| Epidemiological data analysis of viral quasispecies in the next-generation sequencing era S Knyazev, L Hughes, P Skums, A Zelikovsky Briefings in bioinformatics 22 (1), 96-108, 2021 | 62 | 2021 |
| Unlocking capacities of genomics for the COVID-19 response and future pandemics S Knyazev, K Chhugani, V Sarwal, R Ayyala, H Singh, S Karthikeyan, ... Nature methods 19 (4), 374-380, 2022 | 59 | 2022 |
| Benchmarking of computational error-correction methods for next-generation sequencing data K Mitchell, JJ Brito, I Mandric, Q Wu, S Knyazev, S Chang, LS Martin, ... Genome biology 21, 1-13, 2020 | 50 | 2020 |
| MicrobeTrace: Retooling molecular epidemiology for rapid public health response EM Campbell, A Boyles, A Shankar, J Kim, S Knyazev, R Cintron, ... PLoS computational biology 17 (9), e1009300, 2021 | 44 | 2021 |
| Leveraging genomic diversity for discovery in an electronic health record linked biobank: the UCLA ATLAS Community Health Initiative R Johnson, Y Ding, V Venkateswaran, A Bhattacharya, K Boulier, A Chiu, ... Genome medicine 14 (1), 104, 2022 | 43* | 2022 |
| From alpha to zeta: Identifying variants and subtypes of sars-cov-2 via clustering A Melnyk, F Mohebbi, S Knyazev, B Sahoo, R Hosseini, P Skums, ... Journal of Computational Biology 28 (11), 1113-1129, 2021 | 38* | 2021 |
| Pathogenesis, symptomatology, and transmission of SARS-CoV-2 through analysis of viral genomics and structure HM Rando, AL MacLean, AJ Lee, R Lordan, S Ray, V Bansal, AN Skelly, ... MSystems 6 (5), 10.1128/msystems. 00095-21, 2021 | 37 | 2021 |
| Inference of genetic relatedness between viral quasispecies from sequencing data O Glebova, S Knyazev, A Melnyk, A Artyomenko, Y Khudyakov, ... BMC genomics 18, 81-88, 2017 | 33 | 2017 |
| Identification and development of therapeutics for COVID-19 HM Rando, N Wellhausen, S Ghosh, AJ Lee, AA Dattoli, F Hu, JB Byrd, ... Msystems 6 (6), e00233-21, 2021 | 30* | 2021 |
| The UCLA ATLAS Community Health Initiative: promoting precision health research in a diverse biobank R Johnson, Y Ding, A Bhattacharya, S Knyazev, A Chiu, C Lajonchere, ... Cell genomics 3 (1), 2023 | 24 | 2023 |
| Using earth mover’s distance for viral outbreak investigations A Melnyk, S Knyazev, F Vannberg, L Bunimovich, P Skums, A Zelikovsky BMC genomics 21, 1-9, 2020 | 18 | 2020 |
| Repeat-aware evaluation of scaffolding tools I Mandric, S Knyazev, A Zelikovsky Bioinformatics 34 (15), 2530-2537, 2018 | 12 | 2018 |
| Modeling conformational redox‐switch modulation of human succinic semialdehyde dehydrogenase G Tamazian, J Ho Chang, S Knyazev, E Stepanov, KJ Kim, Y Porozov Proteins: Structure, Function, and Bioinformatics 83 (12), 2217-2229, 2015 | 12 | 2015 |
| Molecular epidemiological analysis of the origin and transmission dynamics of the HIV-1 CRF01_AE sub-epidemic in Bulgaria I Alexiev, EM Campbell, S Knyazev, Y Pan, L Grigorova, R Dimitrova, ... Viruses 13 (1), 116, 2021 | 11 | 2021 |
| Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability A Sonrel, A Luetge, C Soneson, I Mallona, PL Germain, S Knyazev, J Gilis, ... Genome Biology 24 (1), 119, 2023 | 9 | 2023 |
| Molecular epidemiology of the HIV-1 Subtype B sub-epidemic in Bulgaria I Alexiev, E M. Campbell, S Knyazev, Y Pan, L Grigorova, R Dimitrova, ... Viruses 12 (4), 441, 2020 | 9 | 2020 |
Alexander ZelikovskyDistinguished University Professor at Georgia State UniversityVerified email at gsu.edu