| In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features Y Ding, Y Tang, CK Kwok, Y Zhang, PC Bevilacqua, SM Assmann Nature 505 (7485), 696-700, 2014 | 853 | 2014 |
| The RNA structurome: transcriptome-wide structure probing with next-generation sequencing CK Kwok, Y Tang, SM Assmann, PC Bevilacqua Trends in biochemical sciences 40 (4), 221-232, 2015 | 171 | 2015 |
| Determination of in vivo RNA structure in low-abundance transcripts CK Kwok, Y Ding, Y Tang, SM Assmann, PC Bevilacqua Nature communications 4 (1), 2971, 2013 | 137 | 2013 |
| Brd4 and P300 confer transcriptional competency during zygotic genome activation SH Chan, Y Tang, L Miao, H Darwich-Codore, CE Vejnar, JD Beaudoin, ... Developmental cell 49 (6), 867-881. e8, 2019 | 135 | 2019 |
| Genome-wide profiling of in vivo RNA structure at single-nucleotide resolution using structure-seq Y Ding, CK Kwok, Y Tang, PC Bevilacqua, SM Assmann Nature protocols 10 (7), 1050-1066, 2015 | 101 | 2015 |
| Genome-wide RNA structurome reprogramming by acute heat shock globally regulates mRNA abundance Z Su, Y Tang, LE Ritchey, DC Tack, M Zhu, PC Bevilacqua, SM Assmann Proceedings of the National Academy of Sciences 115 (48), 12170-12175, 2018 | 95 | 2018 |
| Structure-seq2: sensitive and accurate genome-wide profiling of RNA structure in vivo LE Ritchey, Z Su, Y Tang, DC Tack, SM Assmann, PC Bevilacqua Nucleic acids research 45 (14), e135-e135, 2017 | 81 | 2017 |
| Dppa2/4 facilitate epigenetic remodeling during reprogramming to pluripotency C Hernandez, Z Wang, B Ramazanov, Y Tang, S Mehta, C Dambrot, ... Cell Stem Cell 23 (3), 396-411. e8, 2018 | 72 | 2018 |
| The landscape of pioneer factor activity reveals the mechanisms of chromatin reprogramming and genome activation L Miao, Y Tang, AR Bonneau, SH Chan, ML Kojima, ME Pownall, ... Molecular Cell 82 (5), 986-1002. e9, 2022 | 61 | 2022 |
| StructureFold: genome-wide RNA secondary structure mapping and reconstruction in vivo Y Tang, E Bouvier, CK Kwok, Y Ding, A Nekrutenko, PC Bevilacqua, ... Bioinformatics 31 (16), 2668-2675, 2015 | 56 | 2015 |
| Tertiary enamides as versatile and valuable substrates to reach chemical diversity F Beltran, L Miesch Synthesis 52 (17), 2497-2511, 2020 | 44 | 2020 |
| StructureFold2: bringing chemical probing data into the computational fold of RNA structural analysis DC Tack, Y Tang, LE Ritchey, SM Assmann, PC Bevilacqua Methods 143, 12-15, 2018 | 32 | 2018 |
| Protein structure is related to RNA structural reactivity in vivo Y Tang, SM Assmann, PC Bevilacqua Journal of molecular biology 428 (5), 758-766, 2016 | 24 | 2016 |
| Satb2 acts as a gatekeeper for major developmental transitions during early vertebrate embryogenesis SJ Pradhan, PC Reddy, M Smutny, A Sharma, K Sako, MS Oak, R Shah, ... Nature Communications 12 (1), 6094, 2021 | 12 | 2021 |
| Synergistic activity of Nanog, Pou5f3, and Sox19b establishes chromatin accessibility and developmental competence in a context-dependent manner L Miao, Y Tang, AR Bonneau, SH Chan, ML Kojima, ME Pownall, ... BioRxiv, 2020.09. 01.278796, 2020 | 10 | 2020 |
| Brd4 and P300 regulate zygotic genome activation through histone acetylation SH Chan, Y Tang, L Miao, H Darwich-Codore, CE Vejnar, JD Beaudoin, ... bioRxiv, 369231, 2018 | 10 | 2018 |
| Total synthesis of Asperchalasine A X Long, Y Ding, H Wu, J Deng Synlett 31 (04), 301-308, 2020 | 5 | 2020 |
| Ion channel modeling and simulation using hybrid functional Petri net Y Tang, F Wang International Conference on Intelligent Computing for Sustainable Energy and …, 2010 | 4 | 2010 |
| Neural system modeling and simulation using hybrid functional petri net Y Tang, F Wang Proceedings of the 2nd ACM Conference on Bioinformatics, Computational …, 2011 | 3 | 2011 |
| linc-mipep and linc-wrb encode micropeptides that regulate chromatin accessibility in vertebrate-specific neural cells VA Tornini, L Miao, HJ Lee, T Gerson, SE Dube, V Schmidt, F Kroll, ... Elife 12, e82249, 2023 | 2 | 2023 |
Philip BevilacquaProfessor of Chemistry, The Pennsylvania State UniversityVerified email at psu.edu