| PHISTO: pathogen–host interaction search tool S Durmuş Tekir, T Çakır, E Ardıç, AS Sayılırbaş, G Konuk, M Konuk, ... Bioinformatics 29 (10), 1357-1358, 2013 | 171 | 2013 |
| Linking entities through an ontology using word embeddings and syntactic re-ranking I Karadeniz, A Özgür BMC bioinformatics 20, 1-12, 2019 | 40 | 2019 |
| Bacteria biotope detection, ontology-based normalization, and relation extraction using syntactic rules I Karadeniz, A Özgür Proceedings of the BioNLP Shared Task 2013 Workshop, 170-177, 2013 | 16 | 2013 |
| Literature Mining and Ontology based Analysis of Host-Brucella Gene–Gene Interaction Network I Karadeniz, J Hur, Y He, A Özgür Frontiers in microbiology 6, 1386, 2015 | 10 | 2015 |
| Detection and categorization of bacteria habitats using shallow linguistic analysis İ Karadeniz, A Özgür BMC bioinformatics 16, 1-14, 2015 | 10 | 2015 |
| Graph convolutional network based virus-human protein-protein interaction prediction for novel viruses MB Koca, E Nourani, F Abbasoğlu, İ Karadeniz, FE Sevilgen Computational Biology and Chemistry 101, 107755, 2022 | 9 | 2022 |
| PHISTO: pathogen-host interaction search tool SD Tekir, T Cakir, E Ardic, AS Sayilirbas, G Konuk, M Konuk, H Sariyer, ... Bioinformatics 29 (10), 1357-1358, 2013 | 6 | 2013 |
| BOUN-ISIK participation: an unsupervised approach for the named entity normalization and relation extraction of bacteria biotopes I Karadeniz, ÖF Tuna, A Özgür Proceedings of the 5th workshop on BioNLP open shared tasks, 150-157, 2019 | 5 | 2019 |
| ISIKUN at the FinCausal 2020: linguistically informed machine-learning approach for causality identification in financial documents G Özenir, İ Karadeniz Proceedings of the 1st Joint Workshop on Financial Narrative Processing and …, 2020 | 2 | 2020 |
| Generating Java Class Skeleton Using a Natural Language Interface. E Ozcan, SE Seker, ZI Karadeniz NLUCS, 126-134, 2004 | 2 | 2004 |
| ISIKSumm at BioLaySumm Task 1: BART-based Summarization System Enhanced with Bio-Entity Labels Ç Çolak, İ Karadeniz In The 22nd Workshop on Biomedical Natural Language Processing and BioNLP …, 2023 | 1 | 2023 |
| Çizge evrişim ağı kullanarak patojen-konak ağlarında protein etkileşim tahmini MB Koca, İ Karadeniz, E Nourani, FE Sevilgen IEEE, 2021 | | 2021 |
| PHISTO: A New Web Platform for Pathogen-Human Interactions SD Tekir, T Çakır, E Ardıç, İ Karadeniz, A Özgür, FE Sevilgen, KÖ Ülgen Computational Methods in Systems Biology: 11th International Conference …, 2013 | | 2013 |
Arzucan OzgurDepartment of Computer Engineering, Bogazici UniversityVerified email at boun.edu.tr
