Laurent Noé

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Gregory KucherovDirecteur de recherche CNRS, LIGM, Université Gustave Eiffel, FranceVerified email at univ-mlv.fr
Helene TouzetCNRS, Lille (France)Verified email at univ-lille.fr
Evguenia KopylovaHost-microbiome data analysis | Managing Director, Clarity GenomicsVerified email at clarity-genomics.com
Mikhail RoytbergHead of Applied Math Lab, Institute of Mathematical Problems in Biology RAS, Pushchino, Russia Verified email at lpm.org.ru
Ania GambinInstitute of Informatics University of WarsawVerified email at mimuw.edu.pl
Slawomir LasotaUniversity of Warsaw, prof. of computer scienceVerified email at mimuw.edu.pl
Martin FrithUniversity of Tokyo, National Institute of Advanced Industrial Science and Technology (AIST)Verified email at edu.k.u-tokyo.ac.jp
Yoann DUFRESNEPhD, Institut Pasteur, ParisVerified email at pasteur.fr
Mathieu GiraudSenior Researcher, CNRS, CRIStAL, Université Lille, InriaVerified email at univ-lille.fr
Maude PupinMaître de conférences en informatique, Université de LilleVerified email at univ-lille.fr
Philippe JacquesUniversite de liegeVerified email at uliege.be
Ewa SzczurekAssociate Professor at University of Warsaw / Institute AI for Health, Helmholtz Zentrum MünchenVerified email at mimuw.edu.pl
Dominique LavenierIRISAVerified email at irisa.fr
Miklós CsűrösUniversity of MontrealVerified email at iro.umontreal.ca
Pierre PeterlongoInria - GenScale teamVerified email at inria.fr
Yann PontyResearch director at CNRS & Ecole PolytechniqueVerified email at lix.polytechnique.fr
Maciek SykulskiMedical University of WarsawVerified email at mimuw.edu.pl
Michał StartekUniversity of Warsaw, Faculty of Mathematics, Informatics and Mechanics; Institute of ImmunologyVerified email at mimuw.edu.pl
Matteo CominUniversity of PadovaVerified email at dei.unipd.it
Cinzia PizziAssociate Professor of Computer Engineering, Dept. of Information Engineering, University of PadovaVerified email at dei.unipd.it

Laurent Noé

associate professor (computer science) enseignant-chercheur (informatique), Lille (France)

Verified email at univ-lille.fr - Homepage

Automata Computational Biology Sequence Alignment Similarity Search String Algorithms


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SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data E Kopylova, L Noé, H Touzet Bioinformatics 28 (24), 3211-3217, 2012	2674	2012
YASS: enhancing the sensitivity of DNA similarity search L Noé, G Kucherov Nucleic acids research 33 (suppl_2), W540-W543, 2005	417	2005
A unifying framework for seed sensitivity and its application to subset seeds G Kucherov, L Noé, M Roytberg Journal of Bioinformatics and Computational Biology (JBCB) 4 (2), 553-569, 2006	116	2006
Improved hit criteria for DNA local alignment L Noé, G Kucherov BMC bioinformatics 5, 1-9, 2004	99	2004
Multiseed lossless filtration G Kucherov, L Noé, M Roytberg Transactions on Computational Biology and Bioinformatics (TCBB) 2 (1), 51-61, 2005	83	2005
Norine, the knowledgebase dedicated to non-ribosomal peptides, is now open to crowdsourcing A Flissi, Y Dufresne, J Michalik, L Tonon, S Janot, L Noé, P Jacques, ... Nucleic Acids Research 44 (D1), D1113-D1118, 2016	62	2016
Porechop_ABI: discovering unknown adapters in Oxford Nanopore Technology sequencing reads for downstream trimming Q Bonenfant, L Noé, H Touzet Bioinformatics Advances 3 (1), vbac085, 2023	45	2023
Reconsidering the significance of genomic word frequencies M Csurös, L Noé, G Kucherov Trends in Genetics 23 (11), 543-546, 2007	44	2007
Estimating seed sensitivity on homogeneous alignments G Kucherov, L Noé, Y Ponty Proceedings of the Fourth IEEE Symposium on Bioinformatics and …, 2004	44	2004
Improved search heuristics find 20 000 new alignments between human and mouse genomes MC Frith, L Noé Nucleic acids research 42 (7), e59-e59, 2014	37	2014
A Coverage Criterion for Spaced Seeds and Its Applications to Support Vector Machine String Kernels and k-Mer Distances L Noé, DEK Martin Journal of Computational Biology (JCB) 21 (12), 947-963, 2014	33	2014
On subset seeds for protein alignment M Roytberg, A Gambin, L Noé, S Lasota, E Furletova, E Szczurek, ... Transactions on Computational Biology and Bioinformatics (TCBB) 6 (3), 483-494, 2009	29	2009
Multi-seed lossless filtration (Extended Abstract) G Kucherov, L Noé, M Roytberg Annual Symposium on Combinatorial Pattern Matching (CPM), 297-310, 2004	29*	2004
Minimally overlapping words for sequence similarity search MC Frith, L Noé, G Kucherov Bioinformatics 36 (22-23), 5344-5350, 2020	28	2020
Best hits of 11110110111: model-free selection and parameter-free sensitivity calculation of spaced seeds L Noé Algorithms for Molecular Biology (AMB) 12 (1), 2017	23	2017
Protein similarity search with subset seeds on a dedicated reconfigurable hardware P Peterlongo, L Noé, D Lavenier, G Georges, J Jacques, G Kucherov, ... Parallel Processing and Applied Mathematics (PPAM), 1240-1248, 2008	23	2008
Subset seed automaton G Kucherov, L Noé, M Roytberg Conference on Implementation and Application of Automata (CIAA), 180-191, 2007	23	2007
Back-translation for discovering distant protein homologies in the presence of frameshift mutations M Gîrdea, L Noé, G Kucherov Algorithms for Molecular Biology (AMB) 5 (6), 2010	22	2010
YASS: Similarity search in DNA sequences L Noé, G Kucherov Technical Report, 2003	22	2003
Smiles2Monomers: a link between chemical and biological structures for polymers Y Dufresne, L Noé, V Leclère, M Pupin Journal of cheminformatics 7, 1-11, 2015	21	2015

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