Helene Touzet

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Laurent Noéassociate professor (computer science) enseignant-chercheur (informatique), Lille (France)Verified email at univ-lille.fr
Evguenia KopylovaHost-microbiome data analysis | Managing Director, Clarity GenomicsVerified email at clarity-genomics.com
Daniel GautheretProfessor at the Biology department, Université Paris-SaclayVerified email at u-psud.fr
Pierre PericardUniversity of LilleVerified email at univ-lille.fr
Alain DeniseUniversité Paris-SaclayVerified email at lri.fr
David HotLab director, Transcriptomics & Applied Genomics, Institut Pasteur de LilleVerified email at pasteur-lille.fr
Marie-Josee CrosINRAEVerified email at inrae.fr
Yoann DUFRESNEPhD, Institut Pasteur, ParisVerified email at pasteur.fr
Mathieu GiraudSenior Researcher, CNRS, CRIStAL, Université Lille, InriaVerified email at univ-lille.fr
Guillaume BlinFull Professor of Computer Science, Université de Bordeaux, FranceVerified email at labri.fr
Jean-Marc AuryUniversité Paris Saclay / CEA / GenoscopeVerified email at genoscope.cns.fr
Rayan ChikhiInstitut Pasteur & CNRSVerified email at ens-cachan.org
Camille MarchetCNRSVerified email at univ-lille.fr
Matthieu DefranceUniversité Libre de BruxellesVerified email at ulb.be
Michel SalzetProfesseur of immunology, University of Lille , PRISM U1192 InsermVerified email at univ-lille.fr
Robert GiegerichProfessor for Practical Computer Science and Bioinformatics, Bielefeld UniversityVerified email at techfak.uni-bielefeld.de
Marie-France SagotDirector of Research, InriaVerified email at inria.fr
Cedric ChauveProfessor of Mathematics, Simon Fraser UniversityVerified email at sfu.ca
Fabrice Leclercsenior investigator, CNRS - CEA - Univ. Paris SaclayVerified email at u-psud.fr
Yann PontyResearch director at CNRS & Ecole PolytechniqueVerified email at lix.polytechnique.fr

Helene Touzet

CNRS, Lille (France)

Verified email at univ-lille.fr - Homepage

computational biology algorithms


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data E Kopylova, L Noé, H Touzet Bioinformatics 28 (24), 3211-3217, 2012	2674	2012
Efficient and accurate P-value computation for Position Weight Matrices H Touzet, JS Varré Algorithms for Molecular Biology 2, 1-12, 2007	163	2007
Algorithms with polynomial interpretation termination proof G Bonfante, A Cichon, JY Marion, H Touzet Journal of Functional Programming 11 (1), 33-53, 2001	114	2001
CARNAC: folding families of related RNAs H Touzet, O Perriquet Nucleic acids research 32 (suppl_2), W142-W145, 2004	103	2004
Assessment of common and emerging bioinformatics pipelines for targeted metagenomics L Siegwald, H Touzet, Y Lemoine, D Hot, C Audebert, S Caboche PLoS One 12 (1), e0169563, 2017	100	2017
Analysis of tree edit distance algorithms S Dulucq, H Touzet Combinatorial Pattern Matching, 83-95, 2003	98	2003
Finding the common structure shared by two homologous RNAs O Perriquet, H Touzet, M Dauchet Bioinformatics 19 (1), 108-116, 2003	94	2003
Predicting transcription factor binding sites using local over-representation and comparative genomics M Defrance, H Touzet BMC bioinformatics 7, 1-11, 2006	81	2006
Alignments of RNA structures G Blin, A Denise, S Dulucq, C Herrbach, H Touzet Computational Biology and Bioinformatics, IEEE/ACM Transactions on 7 (2 …, 2010	61	2010
MATAM: reconstruction of phylogenetic marker genes from short sequencing reads in metagenomes P Pericard, Y Dufresne, L Couderc, S Blanquart, H Touzet Bioinformatics 34 (4), 585-591, 2018	56	2018
Porechop_ABI: discovering unknown adapters in Oxford Nanopore Technology sequencing reads for downstream trimming Q Bonenfant, L Noé, H Touzet Bioinformatics Advances 3 (1), vbac085, 2023	53*	2023
Proteomic characterisation of leech microglia extracellular vesicles (EVs): comparison between differential ultracentrifugation and Optiprep™ density gradient isolation T Arab, A Raffo-Romero, C Van Camp, Q Lemaire, F Le Marrec-Croq, ... Journal of extracellular vesicles 8 (1), 1603048, 2019	52	2019
A complete protocol for whole-genome sequencing of virus from clinical samples: Application to coronavirus OC43 F Maurier, D Beury, L Fléchon, JS Varré, H Touzet, A Goffard, D Hot, ... Virology 531, 141-148, 2019	43	2019
A linear tree edit distance algorithm for similar ordered trees H Touzet Combinatorial Pattern Matching, 334-345, 2005	42	2005
Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data L Lima, C Marchet, S Caboche, C Da Silva, B Istace, JM Aury, H Touzet, ... Briefings in bioinformatics 21 (4), 1164-1181, 2020	40	2020
Decomposition algorithms for the tree edit distance problem S Dulucq, H Touzet Journal of Discrete Algorithms 3 (2-4), 448-471, 2005	40	2005
TFM-Explorer: mining cis-regulatory regions in genomes L Tonon, H Touzet, JS Varrï¿ ½ Nucleic acids research 38 (suppl_2), W286-W292, 2010	39	2010
RNAspace. org: An integrated environment for the prediction, annotation, and analysis of ncRNA MJ Cros, A de Monte, J Mariette, P Bardou, B Grenier-Boley, D Gautheret, ... Rna 17 (11), 1947-1956, 2011	38	2011
How to compare arc-annotated sequences: The alignment hierarchy G Blin, H Touzet String Processing and Information Retrieval, 291-303, 2006	38	2006
Encoding the Hydra battle as a rewrite system H Touzet Mathematical Foundations of Computer Science 1998, 267-276, 1998	36	1998

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